Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02900

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02895 and MMJJ_RS02900 are separated by 156 nucleotidesMMJJ_RS02900 and MMJJ_RS02905 are separated by 33 nucleotidesMMJJ_RS02905 and MMJJ_RS02910 are separated by 132 nucleotides MMJJ_RS02890: MMJJ_RS02890 - ATP-binding protein, at 543,871 to 544,728 _RS02890 MMJJ_RS02895: MMJJ_RS02895 - ATP-binding protein, at 544,725 to 545,570 _RS02895 MMJJ_RS02900: MMJJ_RS02900 - hypothetical protein, at 545,727 to 546,011 _RS02900 MMJJ_RS02905: MMJJ_RS02905 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,045 to 546,404 _RS02905 MMJJ_RS02910: MMJJ_RS02910 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,537 to 546,938 _RS02910 Position (kb) 545 546 547Strain fitness (log2 ratio) -2 -1 0 1 2at 544.745 kb on + strandat 544.805 kb on - strandat 544.846 kb on - strand, within MMJJ_RS02895at 544.853 kb on + strand, within MMJJ_RS02895at 544.853 kb on + strand, within MMJJ_RS02895at 544.881 kb on + strand, within MMJJ_RS02895at 544.887 kb on - strand, within MMJJ_RS02895at 544.888 kb on + strand, within MMJJ_RS02895at 544.890 kb on + strand, within MMJJ_RS02895at 544.890 kb on + strand, within MMJJ_RS02895at 544.931 kb on - strand, within MMJJ_RS02895at 544.932 kb on + strand, within MMJJ_RS02895at 544.956 kb on + strand, within MMJJ_RS02895at 544.988 kb on + strand, within MMJJ_RS02895at 545.107 kb on - strand, within MMJJ_RS02895at 545.156 kb on + strand, within MMJJ_RS02895at 545.207 kb on + strand, within MMJJ_RS02895at 545.227 kb on - strand, within MMJJ_RS02895at 545.227 kb on - strand, within MMJJ_RS02895at 545.239 kb on - strand, within MMJJ_RS02895at 545.240 kb on + strand, within MMJJ_RS02895at 545.252 kb on - strand, within MMJJ_RS02895at 545.273 kb on + strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.292 kb on + strand, within MMJJ_RS02895at 545.356 kb on + strand, within MMJJ_RS02895at 545.357 kb on - strand, within MMJJ_RS02895at 545.358 kb on + strand, within MMJJ_RS02895at 545.358 kb on + strand, within MMJJ_RS02895at 545.359 kb on - strandat 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.360 kb on + strand, within MMJJ_RS02895at 545.363 kb on + strand, within MMJJ_RS02895at 545.370 kb on + strand, within MMJJ_RS02895at 545.381 kb on - strand, within MMJJ_RS02895at 545.438 kb on + strand, within MMJJ_RS02895at 545.460 kb on + strand, within MMJJ_RS02895at 545.462 kb on - strand, within MMJJ_RS02895at 545.468 kb on + strand, within MMJJ_RS02895at 545.471 kb on - strand, within MMJJ_RS02895at 545.472 kb on + strand, within MMJJ_RS02895at 545.472 kb on + strand, within MMJJ_RS02895at 545.501 kb on + strandat 545.531 kb on - strandat 545.568 kb on - strandat 545.588 kb on - strandat 545.640 kb on + strandat 545.641 kb on - strandat 545.644 kb on + strandat 545.691 kb on - strandat 545.697 kb on + strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.703 kb on + strandat 545.703 kb on + strandat 545.703 kb on + strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.736 kb on + strandat 545.775 kb on + strand, within MMJJ_RS02900at 545.785 kb on + strand, within MMJJ_RS02900at 545.801 kb on - strand, within MMJJ_RS02900at 545.801 kb on - strand, within MMJJ_RS02900at 545.802 kb on + strand, within MMJJ_RS02900at 545.813 kb on - strand, within MMJJ_RS02900at 545.824 kb on - strand, within MMJJ_RS02900at 545.825 kb on + strand, within MMJJ_RS02900at 545.846 kb on - strand, within MMJJ_RS02900at 545.853 kb on + strand, within MMJJ_RS02900at 545.867 kb on - strand, within MMJJ_RS02900at 545.874 kb on + strand, within MMJJ_RS02900at 545.874 kb on + strand, within MMJJ_RS02900at 545.875 kb on - strand, within MMJJ_RS02900at 545.875 kb on - strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 546.023 kb on + strandat 546.064 kb on - strandat 546.233 kb on - strand, within MMJJ_RS02905at 546.328 kb on - strand, within MMJJ_RS02905at 546.328 kb on - strand, within MMJJ_RS02905at 546.329 kb on + strand, within MMJJ_RS02905at 546.329 kb on + strand, within MMJJ_RS02905at 546.344 kb on + strand, within MMJJ_RS02905at 546.352 kb on - strand, within MMJJ_RS02905at 546.439 kb on + strandat 546.443 kb on + strandat 546.447 kb on - strandat 546.449 kb on - strandat 546.450 kb on + strandat 546.450 kb on + strandat 546.451 kb on - strandat 546.451 kb on - strandat 546.478 kb on - strandat 546.513 kb on - strandat 546.552 kb on - strandat 546.552 kb on - strandat 546.552 kb on - strandat 546.553 kb on + strandat 546.553 kb on + strandat 546.553 kb on + strandat 546.596 kb on - strand, within MMJJ_RS02910at 546.612 kb on + strand, within MMJJ_RS02910at 546.676 kb on - strand, within MMJJ_RS02910at 546.712 kb on - strand, within MMJJ_RS02910at 546.715 kb on - strand, within MMJJ_RS02910at 546.716 kb on + strand, within MMJJ_RS02910at 546.770 kb on - strand, within MMJJ_RS02910at 546.781 kb on - strand, within MMJJ_RS02910at 546.800 kb on - strand, within MMJJ_RS02910at 546.801 kb on + strand, within MMJJ_RS02910at 546.802 kb on - strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.803 kb on + strand, within MMJJ_RS02910at 546.805 kb on - strand, within MMJJ_RS02910at 546.808 kb on - strand, within MMJJ_RS02910at 546.809 kb on + strand, within MMJJ_RS02910at 546.809 kb on + strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.810 kb on - strand, within MMJJ_RS02910at 546.811 kb on + strand, within MMJJ_RS02910at 546.811 kb on + strand, within MMJJ_RS02910at 546.844 kb on - strand, within MMJJ_RS02910at 546.862 kb on - strand, within MMJJ_RS02910at 546.864 kb on - strand, within MMJJ_RS02910at 546.888 kb on + strand, within MMJJ_RS02910at 546.910 kb on - strandat 546.911 kb on + strandat 546.928 kb on - strandat 546.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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544,745 + +1.0
544,805 - +0.6
544,846 - MMJJ_RS02895 0.14 +1.3
544,853 + MMJJ_RS02895 0.15 +0.5
544,853 + MMJJ_RS02895 0.15 +0.2
544,881 + MMJJ_RS02895 0.18 -0.2
544,887 - MMJJ_RS02895 0.19 +0.5
544,888 + MMJJ_RS02895 0.19 +0.1
544,890 + MMJJ_RS02895 0.20 -0.0
544,890 + MMJJ_RS02895 0.20 +0.9
544,931 - MMJJ_RS02895 0.24 +0.6
544,932 + MMJJ_RS02895 0.24 -0.3
544,956 + MMJJ_RS02895 0.27 -0.1
544,988 + MMJJ_RS02895 0.31 +0.4
545,107 - MMJJ_RS02895 0.45 +0.0
545,156 + MMJJ_RS02895 0.51 -0.2
545,207 + MMJJ_RS02895 0.57 -0.4
545,227 - MMJJ_RS02895 0.59 +0.1
545,227 - MMJJ_RS02895 0.59 -0.5
545,239 - MMJJ_RS02895 0.61 -0.5
545,240 + MMJJ_RS02895 0.61 +0.3
545,252 - MMJJ_RS02895 0.62 -2.5
545,273 + MMJJ_RS02895 0.65 +1.3
545,291 - MMJJ_RS02895 0.67 +0.1
545,291 - MMJJ_RS02895 0.67 -0.5
545,291 - MMJJ_RS02895 0.67 +0.1
545,292 + MMJJ_RS02895 0.67 -0.1
545,356 + MMJJ_RS02895 0.75 -0.5
545,357 - MMJJ_RS02895 0.75 -0.2
545,358 + MMJJ_RS02895 0.75 -0.7
545,358 + MMJJ_RS02895 0.75 +0.2
545,359 - +2.6
545,359 - MMJJ_RS02895 0.75 -0.2
545,359 - MMJJ_RS02895 0.75 -0.2
545,359 - MMJJ_RS02895 0.75 +0.1
545,359 - MMJJ_RS02895 0.75 +0.8
545,360 + MMJJ_RS02895 0.75 +0.1
545,363 + MMJJ_RS02895 0.75 -0.2
545,370 + MMJJ_RS02895 0.76 +0.2
545,381 - MMJJ_RS02895 0.78 -0.3
545,438 + MMJJ_RS02895 0.84 +0.4
545,460 + MMJJ_RS02895 0.87 -0.2
545,462 - MMJJ_RS02895 0.87 +0.5
545,468 + MMJJ_RS02895 0.88 -1.2
545,471 - MMJJ_RS02895 0.88 -1.0
545,472 + MMJJ_RS02895 0.88 +0.1
545,472 + MMJJ_RS02895 0.88 +0.8
545,501 + +0.1
545,531 - -0.8
545,568 - +0.0
545,588 - -0.3
545,640 + +0.2
545,641 - +0.3
545,644 + +0.4
545,691 - +0.2
545,697 + +0.8
545,702 - +0.1
545,702 - +0.3
545,702 - +1.1
545,702 - -0.7
545,702 - -0.7
545,702 - +1.1
545,703 + +0.2
545,703 + -0.4
545,703 + -0.3
545,735 - +0.0
545,735 - +0.1
545,735 - -0.1
545,735 - -0.8
545,736 + -0.3
545,775 + MMJJ_RS02900 0.17 -0.4
545,785 + MMJJ_RS02900 0.20 +0.4
545,801 - MMJJ_RS02900 0.26 -0.2
545,801 - MMJJ_RS02900 0.26 +0.2
545,802 + MMJJ_RS02900 0.26 -0.4
545,813 - MMJJ_RS02900 0.30 -0.8
545,824 - MMJJ_RS02900 0.34 -0.3
545,825 + MMJJ_RS02900 0.34 -0.7
545,846 - MMJJ_RS02900 0.42 +0.3
545,853 + MMJJ_RS02900 0.44 -0.1
545,867 - MMJJ_RS02900 0.49 +0.2
545,874 + MMJJ_RS02900 0.52 -0.5
545,874 + MMJJ_RS02900 0.52 +0.0
545,875 - MMJJ_RS02900 0.52 +0.5
545,875 - MMJJ_RS02900 0.52 +1.2
545,876 + MMJJ_RS02900 0.52 -0.9
545,876 + MMJJ_RS02900 0.52 -0.3
545,876 + MMJJ_RS02900 0.52 +0.2
545,876 + MMJJ_RS02900 0.52 -0.2
545,876 + MMJJ_RS02900 0.52 +0.2
546,023 + -0.6
546,064 - +0.5
546,233 - MMJJ_RS02905 0.52 -0.7
546,328 - MMJJ_RS02905 0.79 -0.3
546,328 - MMJJ_RS02905 0.79 -0.4
546,329 + MMJJ_RS02905 0.79 +0.1
546,329 + MMJJ_RS02905 0.79 -0.5
546,344 + MMJJ_RS02905 0.83 +0.1
546,352 - MMJJ_RS02905 0.85 -0.2
546,439 + +0.2
546,443 + +0.2
546,447 - +0.9
546,449 - +0.1
546,450 + -0.8
546,450 + +0.2
546,451 - +0.3
546,451 - +0.6
546,478 - +2.6
546,513 - -0.2
546,552 - -0.2
546,552 - -0.0
546,552 - -1.3
546,553 + -0.2
546,553 + +0.4
546,553 + -0.1
546,596 - MMJJ_RS02910 0.15 -0.3
546,612 + MMJJ_RS02910 0.19 -0.5
546,676 - MMJJ_RS02910 0.35 -0.4
546,712 - MMJJ_RS02910 0.44 +0.3
546,715 - MMJJ_RS02910 0.44 -0.2
546,716 + MMJJ_RS02910 0.45 +0.2
546,770 - MMJJ_RS02910 0.58 -0.7
546,781 - MMJJ_RS02910 0.61 -0.3
546,800 - MMJJ_RS02910 0.65 -0.2
546,801 + MMJJ_RS02910 0.66 +0.4
546,802 - MMJJ_RS02910 0.66 -0.4
546,803 + MMJJ_RS02910 0.66 +0.2
546,803 + MMJJ_RS02910 0.66 -0.3
546,803 + MMJJ_RS02910 0.66 -0.2
546,803 + MMJJ_RS02910 0.66 -0.3
546,803 + MMJJ_RS02910 0.66 -0.6
546,805 - MMJJ_RS02910 0.67 +0.3
546,808 - MMJJ_RS02910 0.67 -0.1
546,809 + MMJJ_RS02910 0.68 -0.4
546,809 + MMJJ_RS02910 0.68 -0.3
546,810 - MMJJ_RS02910 0.68 +0.1
546,810 - MMJJ_RS02910 0.68 -0.1
546,810 - MMJJ_RS02910 0.68 -0.1
546,811 + MMJJ_RS02910 0.68 -0.1
546,811 + MMJJ_RS02910 0.68 -0.3
546,844 - MMJJ_RS02910 0.76 +0.2
546,862 - MMJJ_RS02910 0.81 -0.7
546,864 - MMJJ_RS02910 0.81 -0.0
546,888 + MMJJ_RS02910 0.87 +0.6
546,910 - +0.0
546,911 + +0.0
546,928 - +0.2
546,994 + -0.6

Or see this region's nucleotide sequence