Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01400

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01390 and MMJJ_RS01395 are separated by 69 nucleotidesMMJJ_RS01395 and MMJJ_RS01400 are separated by 26 nucleotidesMMJJ_RS01400 and MMJJ_RS01405 are separated by 262 nucleotides MMJJ_RS01390: MMJJ_RS01390 - MATE family efflux transporter, at 268,109 to 269,452 _RS01390 MMJJ_RS01395: MMJJ_RS01395 - DUF1894 domain-containing protein, at 269,522 to 269,839 _RS01395 MMJJ_RS01400: MMJJ_RS01400 - leucine--tRNA ligase, at 269,866 to 272,733 _RS01400 MMJJ_RS01405: MMJJ_RS01405 - proline--tRNA ligase, at 272,996 to 274,378 _RS01405 Position (kb) 269 270 271 272 273Strain fitness (log2 ratio) -1 0 1 2at 268.867 kb on - strand, within MMJJ_RS01390at 268.868 kb on + strand, within MMJJ_RS01390at 268.891 kb on - strand, within MMJJ_RS01390at 268.905 kb on - strand, within MMJJ_RS01390at 268.906 kb on + strand, within MMJJ_RS01390at 268.906 kb on + strand, within MMJJ_RS01390at 268.907 kb on - strand, within MMJJ_RS01390at 268.908 kb on + strand, within MMJJ_RS01390at 268.908 kb on + strand, within MMJJ_RS01390at 268.908 kb on + strand, within MMJJ_RS01390at 268.941 kb on - strand, within MMJJ_RS01390at 268.942 kb on + strand, within MMJJ_RS01390at 269.016 kb on + strand, within MMJJ_RS01390at 269.017 kb on - strand, within MMJJ_RS01390at 269.018 kb on + strand, within MMJJ_RS01390at 269.018 kb on + strand, within MMJJ_RS01390at 269.018 kb on + strand, within MMJJ_RS01390at 269.021 kb on - strand, within MMJJ_RS01390at 269.037 kb on - strand, within MMJJ_RS01390at 269.038 kb on + strand, within MMJJ_RS01390at 269.071 kb on + strand, within MMJJ_RS01390at 269.104 kb on - strand, within MMJJ_RS01390at 269.105 kb on + strand, within MMJJ_RS01390at 269.107 kb on + strand, within MMJJ_RS01390at 269.112 kb on - strand, within MMJJ_RS01390at 269.112 kb on - strand, within MMJJ_RS01390at 269.112 kb on - strand, within MMJJ_RS01390at 269.142 kb on - strand, within MMJJ_RS01390at 269.143 kb on + strand, within MMJJ_RS01390at 269.148 kb on - strand, within MMJJ_RS01390at 269.163 kb on - strand, within MMJJ_RS01390at 269.193 kb on - strand, within MMJJ_RS01390at 269.236 kb on + strand, within MMJJ_RS01390at 269.244 kb on - strand, within MMJJ_RS01390at 269.244 kb on - strand, within MMJJ_RS01390at 269.246 kb on - strand, within MMJJ_RS01390at 269.304 kb on - strand, within MMJJ_RS01390at 269.305 kb on + strand, within MMJJ_RS01390at 269.388 kb on - strandat 269.413 kb on - strandat 269.414 kb on + strandat 269.414 kb on + strandat 269.415 kb on - strandat 269.416 kb on + strandat 269.416 kb on + strandat 269.442 kb on - strandat 269.442 kb on - strandat 269.443 kb on + strandat 269.472 kb on + strandat 269.472 kb on + strandat 269.494 kb on - strandat 269.495 kb on + strandat 269.498 kb on - strandat 269.517 kb on - strandat 269.517 kb on - strandat 269.595 kb on - strand, within MMJJ_RS01395at 269.632 kb on + strand, within MMJJ_RS01395at 269.644 kb on - strand, within MMJJ_RS01395at 269.657 kb on - strand, within MMJJ_RS01395at 269.674 kb on + strand, within MMJJ_RS01395at 269.702 kb on + strand, within MMJJ_RS01395at 269.767 kb on - strand, within MMJJ_RS01395at 269.767 kb on - strand, within MMJJ_RS01395at 269.767 kb on - strand, within MMJJ_RS01395at 269.773 kb on + strand, within MMJJ_RS01395at 272.811 kb on + strandat 272.826 kb on + strandat 272.865 kb on + strandat 272.867 kb on + strandat 272.874 kb on + strandat 272.874 kb on + strandat 272.874 kb on + strandat 272.874 kb on + strandat 272.878 kb on + strandat 272.878 kb on + strandat 272.891 kb on + strandat 272.891 kb on + strandat 272.898 kb on - strandat 272.898 kb on - strandat 272.899 kb on + strandat 272.914 kb on + strandat 272.914 kb on + strandat 272.940 kb on + strandat 272.975 kb on - strandat 273.318 kb on + strandat 273.318 kb on + strand, within MMJJ_RS01405at 273.318 kb on + strand, within MMJJ_RS01405

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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268,867 - MMJJ_RS01390 0.56 +0.2
268,868 + MMJJ_RS01390 0.56 +1.4
268,891 - MMJJ_RS01390 0.58 -0.2
268,905 - MMJJ_RS01390 0.59 -0.3
268,906 + MMJJ_RS01390 0.59 +0.5
268,906 + MMJJ_RS01390 0.59 +0.4
268,907 - MMJJ_RS01390 0.59 -0.9
268,908 + MMJJ_RS01390 0.59 +0.5
268,908 + MMJJ_RS01390 0.59 -1.2
268,908 + MMJJ_RS01390 0.59 +1.1
268,941 - MMJJ_RS01390 0.62 -0.0
268,942 + MMJJ_RS01390 0.62 -0.2
269,016 + MMJJ_RS01390 0.67 +1.3
269,017 - MMJJ_RS01390 0.68 +0.5
269,018 + MMJJ_RS01390 0.68 -0.3
269,018 + MMJJ_RS01390 0.68 +0.0
269,018 + MMJJ_RS01390 0.68 +0.8
269,021 - MMJJ_RS01390 0.68 +0.6
269,037 - MMJJ_RS01390 0.69 -0.2
269,038 + MMJJ_RS01390 0.69 -0.2
269,071 + MMJJ_RS01390 0.72 +0.0
269,104 - MMJJ_RS01390 0.74 +0.6
269,105 + MMJJ_RS01390 0.74 -0.9
269,107 + MMJJ_RS01390 0.74 -0.6
269,112 - MMJJ_RS01390 0.75 -0.0
269,112 - MMJJ_RS01390 0.75 -0.2
269,112 - MMJJ_RS01390 0.75 +0.9
269,142 - MMJJ_RS01390 0.77 -0.2
269,143 + MMJJ_RS01390 0.77 -0.6
269,148 - MMJJ_RS01390 0.77 -0.1
269,163 - MMJJ_RS01390 0.78 +0.0
269,193 - MMJJ_RS01390 0.81 +2.6
269,236 + MMJJ_RS01390 0.84 +0.7
269,244 - MMJJ_RS01390 0.84 -0.2
269,244 - MMJJ_RS01390 0.84 -0.1
269,246 - MMJJ_RS01390 0.85 -0.0
269,304 - MMJJ_RS01390 0.89 +0.5
269,305 + MMJJ_RS01390 0.89 +0.3
269,388 - -0.3
269,413 - -0.1
269,414 + -0.5
269,414 + +2.2
269,415 - -0.0
269,416 + +0.9
269,416 + -0.0
269,442 - -0.3
269,442 - +1.4
269,443 + +0.1
269,472 + -0.4
269,472 + -0.0
269,494 - -0.2
269,495 + +0.2
269,498 - -0.3
269,517 - +0.1
269,517 - +0.5
269,595 - MMJJ_RS01395 0.23 +0.5
269,632 + MMJJ_RS01395 0.35 +0.2
269,644 - MMJJ_RS01395 0.38 +0.2
269,657 - MMJJ_RS01395 0.42 -0.0
269,674 + MMJJ_RS01395 0.48 +1.8
269,702 + MMJJ_RS01395 0.57 -0.5
269,767 - MMJJ_RS01395 0.77 +0.2
269,767 - MMJJ_RS01395 0.77 -0.1
269,767 - MMJJ_RS01395 0.77 -0.5
269,773 + MMJJ_RS01395 0.79 +0.3
272,811 + +0.8
272,826 + +1.8
272,865 + -0.7
272,867 + -0.7
272,874 + -0.7
272,874 + +0.3
272,874 + -1.2
272,874 + -0.9
272,878 + -0.2
272,878 + -0.5
272,891 + -0.8
272,891 + +0.4
272,898 - -0.2
272,898 - +0.4
272,899 + +0.6
272,914 + -0.1
272,914 + +0.0
272,940 + -0.1
272,975 - -0.2
273,318 + -0.6
273,318 + MMJJ_RS01405 0.23 -0.6
273,318 + MMJJ_RS01405 0.23 +0.8

Or see this region's nucleotide sequence