Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18035

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18040 and HMPREF1058_RS18035 are separated by 295 nucleotidesHMPREF1058_RS18035 and HMPREF1058_RS18030 are separated by 61 nucleotides HMPREF1058_RS18040: HMPREF1058_RS18040 - cytochrome d ubiquinol oxidase subunit II, at 271,090 to 272,235 _RS18040 HMPREF1058_RS18035: HMPREF1058_RS18035 - 6-phosphogluconolactonase, at 272,531 to 273,235 _RS18035 HMPREF1058_RS18030: HMPREF1058_RS18030 - glucose-6-phosphate dehydrogenase, at 273,297 to 274,805 _RS18030 Position (kb) 272 273 274Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 271.743 kb on + strand, within HMPREF1058_RS18040at 271.744 kb on - strand, within HMPREF1058_RS18040at 271.761 kb on - strand, within HMPREF1058_RS18040at 271.832 kb on - strand, within HMPREF1058_RS18040at 271.833 kb on + strand, within HMPREF1058_RS18040at 271.844 kb on - strand, within HMPREF1058_RS18040at 271.962 kb on + strand, within HMPREF1058_RS18040at 271.997 kb on + strand, within HMPREF1058_RS18040at 272.000 kb on + strand, within HMPREF1058_RS18040at 272.025 kb on + strand, within HMPREF1058_RS18040at 272.025 kb on + strand, within HMPREF1058_RS18040at 272.026 kb on - strand, within HMPREF1058_RS18040at 272.028 kb on + strand, within HMPREF1058_RS18040at 272.033 kb on - strand, within HMPREF1058_RS18040at 272.038 kb on + strandat 272.122 kb on + strandat 272.138 kb on + strandat 272.155 kb on + strandat 272.158 kb on - strandat 272.160 kb on + strandat 272.164 kb on + strandat 272.181 kb on - strandat 272.196 kb on + strandat 272.230 kb on + strandat 272.253 kb on + strandat 272.253 kb on + strandat 272.342 kb on + strandat 272.342 kb on + strandat 272.343 kb on - strandat 272.363 kb on - strandat 272.460 kb on + strandat 272.461 kb on - strandat 272.461 kb on - strandat 272.469 kb on + strandat 272.470 kb on - strandat 272.498 kb on - strandat 272.520 kb on + strandat 272.529 kb on + strandat 272.533 kb on - strandat 272.538 kb on - strandat 272.550 kb on + strandat 272.551 kb on - strandat 272.564 kb on - strandat 272.582 kb on - strandat 272.584 kb on - strandat 272.584 kb on - strandat 272.672 kb on - strand, within HMPREF1058_RS18035at 272.710 kb on + strand, within HMPREF1058_RS18035at 272.728 kb on - strand, within HMPREF1058_RS18035at 272.748 kb on + strand, within HMPREF1058_RS18035at 272.800 kb on + strand, within HMPREF1058_RS18035at 272.801 kb on - strand, within HMPREF1058_RS18035at 272.801 kb on - strand, within HMPREF1058_RS18035at 272.826 kb on - strand, within HMPREF1058_RS18035at 272.889 kb on + strand, within HMPREF1058_RS18035at 272.889 kb on + strand, within HMPREF1058_RS18035at 272.938 kb on - strand, within HMPREF1058_RS18035at 272.938 kb on - strand, within HMPREF1058_RS18035at 272.957 kb on + strand, within HMPREF1058_RS18035at 272.958 kb on - strand, within HMPREF1058_RS18035at 272.958 kb on - strand, within HMPREF1058_RS18035at 272.963 kb on - strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.067 kb on - strand, within HMPREF1058_RS18035at 273.113 kb on - strand, within HMPREF1058_RS18035at 273.137 kb on - strand, within HMPREF1058_RS18035at 273.173 kb on + strandat 273.174 kb on - strandat 273.176 kb on - strandat 273.176 kb on - strandat 273.183 kb on - strandat 273.204 kb on - strandat 273.217 kb on - strandat 273.256 kb on + strandat 273.277 kb on + strandat 273.305 kb on + strandat 273.376 kb on - strandat 273.462 kb on - strand, within HMPREF1058_RS18030at 273.470 kb on - strand, within HMPREF1058_RS18030at 273.513 kb on - strand, within HMPREF1058_RS18030at 273.550 kb on + strand, within HMPREF1058_RS18030at 273.550 kb on + strand, within HMPREF1058_RS18030at 273.550 kb on + strand, within HMPREF1058_RS18030at 273.550 kb on + strand, within HMPREF1058_RS18030at 273.551 kb on - strand, within HMPREF1058_RS18030at 273.551 kb on - strand, within HMPREF1058_RS18030at 273.614 kb on - strand, within HMPREF1058_RS18030at 273.700 kb on + strand, within HMPREF1058_RS18030at 273.853 kb on + strand, within HMPREF1058_RS18030at 273.857 kb on + strand, within HMPREF1058_RS18030at 273.858 kb on - strand, within HMPREF1058_RS18030at 273.953 kb on + strand, within HMPREF1058_RS18030at 273.955 kb on + strand, within HMPREF1058_RS18030at 273.955 kb on + strand, within HMPREF1058_RS18030at 273.956 kb on - strand, within HMPREF1058_RS18030at 273.960 kb on - strand, within HMPREF1058_RS18030at 273.960 kb on - strand, within HMPREF1058_RS18030at 274.053 kb on - strand, within HMPREF1058_RS18030at 274.111 kb on + strand, within HMPREF1058_RS18030at 274.112 kb on - strand, within HMPREF1058_RS18030at 274.131 kb on + strand, within HMPREF1058_RS18030at 274.131 kb on + strand, within HMPREF1058_RS18030at 274.131 kb on + strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.132 kb on - strand, within HMPREF1058_RS18030at 274.161 kb on + strand, within HMPREF1058_RS18030at 274.165 kb on + strand, within HMPREF1058_RS18030at 274.165 kb on + strand, within HMPREF1058_RS18030at 274.165 kb on + strand, within HMPREF1058_RS18030at 274.166 kb on - strand, within HMPREF1058_RS18030at 274.175 kb on - strand, within HMPREF1058_RS18030at 274.203 kb on - strand, within HMPREF1058_RS18030at 274.227 kb on - strand, within HMPREF1058_RS18030

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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271,743 + HMPREF1058_RS18040 0.57 -1.5
271,744 - HMPREF1058_RS18040 0.57 +0.1
271,761 - HMPREF1058_RS18040 0.59 -0.7
271,832 - HMPREF1058_RS18040 0.65 +0.1
271,833 + HMPREF1058_RS18040 0.65 -0.6
271,844 - HMPREF1058_RS18040 0.66 +0.2
271,962 + HMPREF1058_RS18040 0.76 +0.4
271,997 + HMPREF1058_RS18040 0.79 -0.3
272,000 + HMPREF1058_RS18040 0.79 +0.5
272,025 + HMPREF1058_RS18040 0.82 -0.3
272,025 + HMPREF1058_RS18040 0.82 -0.0
272,026 - HMPREF1058_RS18040 0.82 -0.7
272,028 + HMPREF1058_RS18040 0.82 -0.7
272,033 - HMPREF1058_RS18040 0.82 -0.8
272,038 + +0.5
272,122 + +0.4
272,138 + -0.8
272,155 + -0.6
272,158 - +0.6
272,160 + -0.5
272,164 + +0.5
272,181 - -1.3
272,196 + -0.0
272,230 + +0.3
272,253 + +0.2
272,253 + -0.6
272,342 + +0.4
272,342 + +0.6
272,343 - +0.2
272,363 - -0.3
272,460 + -0.6
272,461 - -0.6
272,461 - +0.2
272,469 + +0.2
272,470 - -1.3
272,498 - -0.5
272,520 + -0.1
272,529 + -0.2
272,533 - +0.3
272,538 - +0.1
272,550 + -2.1
272,551 - -2.5
272,564 - -1.9
272,582 - -1.4
272,584 - -1.9
272,584 - -2.6
272,672 - HMPREF1058_RS18035 0.20 -0.3
272,710 + HMPREF1058_RS18035 0.25 -1.3
272,728 - HMPREF1058_RS18035 0.28 -3.1
272,748 + HMPREF1058_RS18035 0.31 -2.4
272,800 + HMPREF1058_RS18035 0.38 -1.8
272,801 - HMPREF1058_RS18035 0.38 -4.4
272,801 - HMPREF1058_RS18035 0.38 -3.1
272,826 - HMPREF1058_RS18035 0.42 -3.6
272,889 + HMPREF1058_RS18035 0.51 -3.7
272,889 + HMPREF1058_RS18035 0.51 -1.5
272,938 - HMPREF1058_RS18035 0.58 -1.2
272,938 - HMPREF1058_RS18035 0.58 -2.3
272,957 + HMPREF1058_RS18035 0.60 -4.2
272,958 - HMPREF1058_RS18035 0.61 -2.8
272,958 - HMPREF1058_RS18035 0.61 -3.1
272,963 - HMPREF1058_RS18035 0.61 -2.1
273,066 + HMPREF1058_RS18035 0.76 -2.5
273,066 + HMPREF1058_RS18035 0.76 -1.8
273,066 + HMPREF1058_RS18035 0.76 -3.2
273,067 - HMPREF1058_RS18035 0.76 -1.7
273,113 - HMPREF1058_RS18035 0.83 -3.0
273,137 - HMPREF1058_RS18035 0.86 -2.4
273,173 + -3.1
273,174 - -0.6
273,176 - -2.6
273,176 - -2.8
273,183 - -1.5
273,204 - -3.2
273,217 - -4.1
273,256 + -2.1
273,277 + -2.7
273,305 + -1.0
273,376 - -0.1
273,462 - HMPREF1058_RS18030 0.11 +0.3
273,470 - HMPREF1058_RS18030 0.11 +0.2
273,513 - HMPREF1058_RS18030 0.14 -1.3
273,550 + HMPREF1058_RS18030 0.17 -0.3
273,550 + HMPREF1058_RS18030 0.17 +0.0
273,550 + HMPREF1058_RS18030 0.17 -1.2
273,550 + HMPREF1058_RS18030 0.17 +1.5
273,551 - HMPREF1058_RS18030 0.17 +1.0
273,551 - HMPREF1058_RS18030 0.17 -1.5
273,614 - HMPREF1058_RS18030 0.21 +0.7
273,700 + HMPREF1058_RS18030 0.27 -0.5
273,853 + HMPREF1058_RS18030 0.37 -0.5
273,857 + HMPREF1058_RS18030 0.37 +0.7
273,858 - HMPREF1058_RS18030 0.37 -0.4
273,953 + HMPREF1058_RS18030 0.43 -0.5
273,955 + HMPREF1058_RS18030 0.44 -1.3
273,955 + HMPREF1058_RS18030 0.44 -0.6
273,956 - HMPREF1058_RS18030 0.44 +1.2
273,960 - HMPREF1058_RS18030 0.44 -0.0
273,960 - HMPREF1058_RS18030 0.44 -0.6
274,053 - HMPREF1058_RS18030 0.50 -2.5
274,111 + HMPREF1058_RS18030 0.54 +0.5
274,112 - HMPREF1058_RS18030 0.54 -1.3
274,131 + HMPREF1058_RS18030 0.55 -1.3
274,131 + HMPREF1058_RS18030 0.55 +0.7
274,131 + HMPREF1058_RS18030 0.55 -1.5
274,132 - HMPREF1058_RS18030 0.55 -0.1
274,132 - HMPREF1058_RS18030 0.55 -0.9
274,132 - HMPREF1058_RS18030 0.55 -1.7
274,132 - HMPREF1058_RS18030 0.55 +0.6
274,132 - HMPREF1058_RS18030 0.55 +0.2
274,161 + HMPREF1058_RS18030 0.57 -0.5
274,165 + HMPREF1058_RS18030 0.58 +0.4
274,165 + HMPREF1058_RS18030 0.58 -1.4
274,165 + HMPREF1058_RS18030 0.58 -0.3
274,166 - HMPREF1058_RS18030 0.58 +0.2
274,175 - HMPREF1058_RS18030 0.58 +0.0
274,203 - HMPREF1058_RS18030 0.60 +0.1
274,227 - HMPREF1058_RS18030 0.62 +0.1

Or see this region's nucleotide sequence