Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03865

Experiment: a-Cyclodextrin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_03863 and CCNA_03864 are separated by 253 nucleotidesCCNA_03864 and CCNA_03865 are separated by 139 nucleotidesCCNA_03865 and CCNA_03866 are separated by 11 nucleotidesCCNA_03866 and CCNA_03867 are separated by 5 nucleotides CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235 _03863 CCNA_03864: CCNA_03864 - hypothetical protein, at 4,025,489 to 4,026,016 _03864 CCNA_03865: CCNA_03865 - leucyl-tRNA synthetase, at 4,026,156 to 4,028,741 _03865 CCNA_03866: CCNA_03866 - LptE superfamily protein, at 4,028,753 to 4,029,253 _03866 CCNA_03867: CCNA_03867 - DNA polymerase III, delta subunit, at 4,029,259 to 4,030,311 _03867 Position (kb) 4026 4027 4028 4029Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4025.158 kb on - strand, within CCNA_03863at 4025.158 kb on - strand, within CCNA_03863at 4025.158 kb on - strand, within CCNA_03863at 4025.204 kb on - strandat 4025.269 kb on - strandat 4025.281 kb on - strandat 4025.303 kb on + strandat 4025.311 kb on - strandat 4025.428 kb on + strandat 4025.435 kb on - strandat 4025.441 kb on - strandat 4025.494 kb on - strandat 4025.499 kb on + strandat 4025.501 kb on + strandat 4025.505 kb on - strandat 4025.507 kb on - strandat 4025.507 kb on - strandat 4025.507 kb on - strandat 4025.509 kb on - strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.520 kb on + strandat 4025.525 kb on + strandat 4025.528 kb on - strandat 4025.607 kb on - strand, within CCNA_03864at 4025.620 kb on + strand, within CCNA_03864at 4025.687 kb on + strand, within CCNA_03864at 4025.698 kb on + strand, within CCNA_03864at 4025.723 kb on + strand, within CCNA_03864at 4025.740 kb on + strand, within CCNA_03864at 4025.747 kb on + strand, within CCNA_03864at 4025.752 kb on + strand, within CCNA_03864at 4025.755 kb on - strand, within CCNA_03864at 4025.755 kb on - strand, within CCNA_03864at 4025.765 kb on - strand, within CCNA_03864at 4025.809 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.824 kb on + strand, within CCNA_03864at 4025.830 kb on + strand, within CCNA_03864at 4025.832 kb on - strand, within CCNA_03864at 4025.832 kb on - strand, within CCNA_03864at 4025.832 kb on - strand, within CCNA_03864at 4025.832 kb on - strand, within CCNA_03864at 4025.832 kb on - strandat 4025.832 kb on - strand, within CCNA_03864at 4025.837 kb on + strand, within CCNA_03864at 4025.837 kb on + strand, within CCNA_03864at 4025.845 kb on - strand, within CCNA_03864at 4025.851 kb on - strand, within CCNA_03864at 4025.865 kb on + strand, within CCNA_03864at 4025.871 kb on + strand, within CCNA_03864at 4025.886 kb on + strand, within CCNA_03864at 4025.895 kb on - strand, within CCNA_03864at 4025.896 kb on + strand, within CCNA_03864at 4025.896 kb on + strand, within CCNA_03864at 4025.896 kb on + strand, within CCNA_03864at 4025.896 kb on + strand, within CCNA_03864at 4025.896 kb on + strand, within CCNA_03864at 4025.904 kb on - strand, within CCNA_03864at 4025.904 kb on - strand, within CCNA_03864at 4025.904 kb on - strand, within CCNA_03864at 4025.904 kb on - strand, within CCNA_03864at 4025.904 kb on - strand, within CCNA_03864at 4025.939 kb on + strand, within CCNA_03864at 4025.947 kb on - strand, within CCNA_03864at 4025.960 kb on - strand, within CCNA_03864at 4025.996 kb on - strandat 4026.011 kb on + strandat 4026.032 kb on - strandat 4026.084 kb on - strandat 4026.084 kb on - strandat 4026.084 kb on - strandat 4026.094 kb on + strandat 4029.247 kb on + strandat 4029.267 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
remove
4,025,158 - CCNA_03863 0.81 +3.1
4,025,158 - CCNA_03863 0.81 +3.1
4,025,158 - CCNA_03863 0.81 +3.1
4,025,204 - +3.1
4,025,269 - +2.3
4,025,281 - +2.7
4,025,303 + -3.2
4,025,311 - +2.6
4,025,428 + +1.3
4,025,435 - +0.6
4,025,441 - -2.3
4,025,494 - -2.4
4,025,499 + -2.6
4,025,501 + -4.6
4,025,505 - -2.3
4,025,507 - -0.6
4,025,507 - -3.3
4,025,507 - -3.3
4,025,509 - -3.1
4,025,520 + -0.7
4,025,520 + -4.1
4,025,520 + -4.7
4,025,520 + -1.7
4,025,520 + -3.1
4,025,520 + -2.9
4,025,520 + -2.4
4,025,520 + -3.2
4,025,520 + -2.7
4,025,520 + -2.8
4,025,525 + +0.7
4,025,528 - -3.1
4,025,607 - CCNA_03864 0.22 -2.0
4,025,620 + CCNA_03864 0.25 -3.0
4,025,687 + CCNA_03864 0.38 -2.9
4,025,698 + CCNA_03864 0.40 -4.3
4,025,723 + CCNA_03864 0.44 -3.1
4,025,740 + CCNA_03864 0.48 -4.6
4,025,747 + CCNA_03864 0.49 -3.0
4,025,752 + CCNA_03864 0.50 -4.1
4,025,755 - CCNA_03864 0.50 -2.2
4,025,755 - CCNA_03864 0.50 +0.7
4,025,765 - CCNA_03864 0.52 -0.9
4,025,809 + CCNA_03864 0.61 -3.6
4,025,824 + CCNA_03864 0.63 -4.8
4,025,824 + CCNA_03864 0.63 -3.9
4,025,824 + CCNA_03864 0.63 -2.7
4,025,824 + CCNA_03864 0.63 -2.5
4,025,824 + CCNA_03864 0.63 -2.9
4,025,824 + CCNA_03864 0.63 -4.2
4,025,824 + CCNA_03864 0.63 -3.6
4,025,824 + CCNA_03864 0.63 -1.2
4,025,824 + CCNA_03864 0.63 -4.6
4,025,824 + CCNA_03864 0.63 -2.6
4,025,824 + CCNA_03864 0.63 -3.1
4,025,830 + CCNA_03864 0.65 -4.7
4,025,832 - CCNA_03864 0.65 -3.1
4,025,832 - CCNA_03864 0.65 -4.0
4,025,832 - CCNA_03864 0.65 -2.8
4,025,832 - CCNA_03864 0.65 -0.4
4,025,832 - -0.3
4,025,832 - CCNA_03864 0.65 -3.5
4,025,837 + CCNA_03864 0.66 -3.3
4,025,837 + CCNA_03864 0.66 -1.6
4,025,845 - CCNA_03864 0.67 -2.9
4,025,851 - CCNA_03864 0.69 -2.1
4,025,865 + CCNA_03864 0.71 -5.4
4,025,871 + CCNA_03864 0.72 -2.2
4,025,886 + CCNA_03864 0.75 -4.1
4,025,895 - CCNA_03864 0.77 -3.1
4,025,896 + CCNA_03864 0.77 -4.2
4,025,896 + CCNA_03864 0.77 -2.7
4,025,896 + CCNA_03864 0.77 -3.9
4,025,896 + CCNA_03864 0.77 -1.1
4,025,896 + CCNA_03864 0.77 -4.7
4,025,904 - CCNA_03864 0.79 -3.4
4,025,904 - CCNA_03864 0.79 -3.4
4,025,904 - CCNA_03864 0.79 -2.8
4,025,904 - CCNA_03864 0.79 -2.8
4,025,904 - CCNA_03864 0.79 -4.9
4,025,939 + CCNA_03864 0.85 -3.2
4,025,947 - CCNA_03864 0.87 -1.5
4,025,960 - CCNA_03864 0.89 -3.3
4,025,996 - -2.8
4,026,011 + +3.0
4,026,032 - +0.0
4,026,084 - +0.7
4,026,084 - -0.7
4,026,084 - -0.6
4,026,094 + +1.4
4,029,247 + +2.3
4,029,267 + +2.1

Or see this region's nucleotide sequence