Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03686 and CCNA_03687 are separated by 73 nucleotides CCNA_03687 and CCNA_03688 are separated by 72 nucleotides CCNA_03688 and CCNA_03689 are separated by 119 nucleotides
CCNA_03686: CCNA_03686 - alpha2 macroglobulin domain-containing extracellular protein, at 3,848,258 to 3,853,318
_03686
CCNA_03687: CCNA_03687 - carbonic anhydrase, at 3,853,392 to 3,854,219
_03687
CCNA_03688: CCNA_03688 - AsnC-family transcriptional regulator, at 3,854,292 to 3,854,765
_03688
CCNA_03689: CCNA_03689 - alanine dehydrogenase, at 3,854,885 to 3,855,997
_03689
Position (kb) 3854
3855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3853.321 kb on + strand at 3853.321 kb on + strand at 3853.333 kb on + strand at 3853.333 kb on + strand at 3853.333 kb on + strand at 3853.333 kb on + strand at 3853.336 kb on - strand at 3853.336 kb on - strand at 3853.341 kb on - strand at 3853.341 kb on - strand at 3853.341 kb on - strand at 3853.341 kb on - strand at 3853.343 kb on + strand at 3853.344 kb on + strand at 3853.367 kb on + strand at 3853.367 kb on + strand at 3853.367 kb on + strand at 3853.375 kb on - strand at 3853.422 kb on - strand at 3853.424 kb on + strand at 3853.424 kb on + strand at 3853.424 kb on + strand at 3853.432 kb on - strand at 3853.432 kb on - strand at 3853.432 kb on - strand at 3853.432 kb on - strand at 3853.438 kb on + strand at 3853.456 kb on + strand at 3853.467 kb on - strand at 3853.467 kb on - strand at 3853.467 kb on - strand at 3853.492 kb on + strand, within CCNA_03687 at 3853.500 kb on - strand, within CCNA_03687 at 3853.593 kb on + strand, within CCNA_03687 at 3853.598 kb on + strand, within CCNA_03687 at 3853.606 kb on - strand, within CCNA_03687 at 3853.606 kb on - strand, within CCNA_03687 at 3853.615 kb on + strand, within CCNA_03687 at 3853.616 kb on - strand, within CCNA_03687 at 3853.616 kb on - strand, within CCNA_03687 at 3853.626 kb on - strand, within CCNA_03687 at 3853.628 kb on - strand, within CCNA_03687 at 3853.683 kb on + strand, within CCNA_03687 at 3853.683 kb on + strand, within CCNA_03687 at 3853.691 kb on - strand, within CCNA_03687 at 3853.695 kb on + strand, within CCNA_03687 at 3853.695 kb on + strand, within CCNA_03687 at 3853.703 kb on - strand, within CCNA_03687 at 3853.703 kb on - strand, within CCNA_03687 at 3853.705 kb on + strand, within CCNA_03687 at 3853.715 kb on - strand, within CCNA_03687 at 3853.745 kb on - strand, within CCNA_03687 at 3853.745 kb on - strand, within CCNA_03687 at 3853.750 kb on - strand, within CCNA_03687 at 3853.765 kb on - strand, within CCNA_03687 at 3853.803 kb on + strand, within CCNA_03687 at 3853.862 kb on + strand, within CCNA_03687 at 3853.870 kb on + strand, within CCNA_03687 at 3853.870 kb on + strand, within CCNA_03687 at 3853.870 kb on + strand, within CCNA_03687 at 3853.870 kb on - strand, within CCNA_03687 at 3853.882 kb on + strand, within CCNA_03687 at 3853.905 kb on - strand, within CCNA_03687 at 3853.906 kb on - strand, within CCNA_03687 at 3853.915 kb on - strand, within CCNA_03687 at 3853.915 kb on - strand, within CCNA_03687 at 3853.926 kb on - strand, within CCNA_03687 at 3853.935 kb on + strand, within CCNA_03687 at 3853.944 kb on + strand, within CCNA_03687 at 3853.957 kb on - strand, within CCNA_03687 at 3853.959 kb on + strand, within CCNA_03687 at 3853.959 kb on + strand, within CCNA_03687 at 3853.959 kb on + strand, within CCNA_03687 at 3853.959 kb on + strand, within CCNA_03687 at 3853.959 kb on + strand, within CCNA_03687 at 3853.959 kb on + strand, within CCNA_03687 at 3853.959 kb on + strand, within CCNA_03687 at 3853.959 kb on + strand, within CCNA_03687 at 3853.967 kb on - strand, within CCNA_03687 at 3853.967 kb on - strand, within CCNA_03687 at 3853.967 kb on - strand, within CCNA_03687 at 3853.967 kb on - strand, within CCNA_03687 at 3853.967 kb on - strand, within CCNA_03687 at 3853.967 kb on - strand, within CCNA_03687 at 3853.967 kb on - strand, within CCNA_03687 at 3853.967 kb on - strand, within CCNA_03687 at 3853.994 kb on + strand, within CCNA_03687 at 3854.001 kb on + strand, within CCNA_03687 at 3854.001 kb on + strand, within CCNA_03687 at 3854.001 kb on + strand, within CCNA_03687 at 3854.009 kb on - strand, within CCNA_03687 at 3854.009 kb on - strand, within CCNA_03687 at 3854.034 kb on - strand, within CCNA_03687 at 3854.046 kb on + strand, within CCNA_03687 at 3854.046 kb on + strand, within CCNA_03687 at 3854.054 kb on - strand, within CCNA_03687 at 3854.070 kb on - strand, within CCNA_03687 at 3854.137 kb on - strand at 3854.150 kb on - strand at 3854.168 kb on - strand at 3854.253 kb on + strand at 3854.253 kb on + strand at 3854.253 kb on + strand at 3854.268 kb on + strand at 3854.276 kb on - strand at 3854.286 kb on - strand at 3854.319 kb on - strand at 3854.319 kb on - strand at 3854.325 kb on + strand at 3854.325 kb on + strand at 3854.333 kb on - strand at 3854.333 kb on - strand at 3854.354 kb on - strand, within CCNA_03688 at 3854.354 kb on - strand, within CCNA_03688 at 3854.354 kb on - strand, within CCNA_03688 at 3854.354 kb on - strand, within CCNA_03688 at 3854.355 kb on - strand, within CCNA_03688 at 3854.356 kb on + strand, within CCNA_03688 at 3854.367 kb on - strand, within CCNA_03688 at 3854.468 kb on - strand, within CCNA_03688 at 3854.468 kb on - strand, within CCNA_03688 at 3854.469 kb on - strand, within CCNA_03688 at 3854.485 kb on + strand, within CCNA_03688 at 3854.488 kb on - strand, within CCNA_03688 at 3854.493 kb on - strand, within CCNA_03688 at 3854.523 kb on - strand, within CCNA_03688 at 3854.564 kb on + strand, within CCNA_03688 at 3854.564 kb on + strand, within CCNA_03688 at 3854.588 kb on + strand, within CCNA_03688 at 3854.621 kb on - strand, within CCNA_03688 at 3854.658 kb on - strand, within CCNA_03688 at 3854.678 kb on + strand, within CCNA_03688 at 3854.806 kb on + strand at 3854.934 kb on + strand at 3854.934 kb on + strand at 3854.934 kb on + strand at 3854.942 kb on - strand at 3854.942 kb on - strand at 3854.942 kb on - strand at 3854.971 kb on + strand at 3854.974 kb on - strand at 3855.029 kb on + strand, within CCNA_03689 at 3855.033 kb on + strand, within CCNA_03689 at 3855.036 kb on - strand, within CCNA_03689 at 3855.074 kb on + strand, within CCNA_03689 at 3855.074 kb on + strand, within CCNA_03689 at 3855.103 kb on + strand, within CCNA_03689 at 3855.103 kb on + strand, within CCNA_03689 at 3855.103 kb on + strand, within CCNA_03689 at 3855.103 kb on + strand, within CCNA_03689 at 3855.111 kb on - strand, within CCNA_03689 at 3855.118 kb on - strand, within CCNA_03689 at 3855.155 kb on + strand at 3855.155 kb on + strand, within CCNA_03689 at 3855.163 kb on - strand, within CCNA_03689 at 3855.205 kb on + strand, within CCNA_03689 at 3855.205 kb on + strand, within CCNA_03689 at 3855.205 kb on + strand, within CCNA_03689 at 3855.224 kb on + strand, within CCNA_03689 at 3855.305 kb on + strand, within CCNA_03689 at 3855.328 kb on - strand, within CCNA_03689 at 3855.364 kb on - strand, within CCNA_03689 at 3855.369 kb on - strand, within CCNA_03689 at 3855.383 kb on + strand, within CCNA_03689 at 3855.391 kb on - strand, within CCNA_03689 at 3855.409 kb on - strand, within CCNA_03689 at 3855.480 kb on + strand, within CCNA_03689 at 3855.518 kb on - strand, within CCNA_03689 at 3855.545 kb on + strand, within CCNA_03689 at 3855.571 kb on + strand, within CCNA_03689 at 3855.571 kb on + strand, within CCNA_03689 at 3855.571 kb on + strand, within CCNA_03689 at 3855.579 kb on - strand, within CCNA_03689 at 3855.599 kb on + strand, within CCNA_03689 at 3855.599 kb on + strand, within CCNA_03689 at 3855.634 kb on - strand, within CCNA_03689 at 3855.646 kb on + strand at 3855.646 kb on + strand, within CCNA_03689 at 3855.646 kb on + strand, within CCNA_03689 at 3855.654 kb on - strand, within CCNA_03689 at 3855.654 kb on - strand, within CCNA_03689 at 3855.663 kb on - strand, within CCNA_03689 at 3855.666 kb on + strand, within CCNA_03689 at 3855.700 kb on - strand, within CCNA_03689 at 3855.705 kb on + strand, within CCNA_03689 at 3855.705 kb on + strand, within CCNA_03689 at 3855.705 kb on + strand, within CCNA_03689 at 3855.729 kb on + strand, within CCNA_03689 at 3855.737 kb on + strand, within CCNA_03689 at 3855.737 kb on - strand, within CCNA_03689 at 3855.743 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689 at 3855.764 kb on + strand, within CCNA_03689
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 3,853,321 + -2.1 3,853,321 + +1.1 3,853,333 + -2.7 3,853,333 + +0.4 3,853,333 + -2.2 3,853,333 + -0.7 3,853,336 - +1.2 3,853,336 - +1.7 3,853,341 - +0.4 3,853,341 - +1.5 3,853,341 - -0.1 3,853,341 - +1.5 3,853,343 + -1.5 3,853,344 + +0.4 3,853,367 + -2.1 3,853,367 + -1.9 3,853,367 + -1.5 3,853,375 - +2.2 3,853,422 - +1.6 3,853,424 + -1.9 3,853,424 + +0.6 3,853,424 + +0.6 3,853,432 - +0.6 3,853,432 - -0.0 3,853,432 - +2.0 3,853,432 - +1.5 3,853,438 + -0.9 3,853,456 + +1.7 3,853,467 - +0.2 3,853,467 - +1.2 3,853,467 - -1.6 3,853,492 + CCNA_03687 0.12 -0.8 3,853,500 - CCNA_03687 0.13 +0.5 3,853,593 + CCNA_03687 0.24 -3.0 3,853,598 + CCNA_03687 0.25 -1.4 3,853,606 - CCNA_03687 0.26 +0.8 3,853,606 - CCNA_03687 0.26 +0.7 3,853,615 + CCNA_03687 0.27 +0.4 3,853,616 - CCNA_03687 0.27 +1.3 3,853,616 - CCNA_03687 0.27 +1.5 3,853,626 - CCNA_03687 0.28 +1.0 3,853,628 - CCNA_03687 0.29 +0.8 3,853,683 + CCNA_03687 0.35 -3.2 3,853,683 + CCNA_03687 0.35 -0.7 3,853,691 - CCNA_03687 0.36 +0.2 3,853,695 + CCNA_03687 0.37 +0.7 3,853,695 + CCNA_03687 0.37 -0.3 3,853,703 - CCNA_03687 0.38 +1.3 3,853,703 - CCNA_03687 0.38 -0.3 3,853,705 + CCNA_03687 0.38 -1.7 3,853,715 - CCNA_03687 0.39 +0.5 3,853,745 - CCNA_03687 0.43 +0.4 3,853,745 - CCNA_03687 0.43 +0.5 3,853,750 - CCNA_03687 0.43 +1.6 3,853,765 - CCNA_03687 0.45 -1.9 3,853,803 + CCNA_03687 0.50 -1.4 3,853,862 + CCNA_03687 0.57 +0.5 3,853,870 + CCNA_03687 0.58 -2.3 3,853,870 + CCNA_03687 0.58 -1.2 3,853,870 + CCNA_03687 0.58 -1.1 3,853,870 - CCNA_03687 0.58 -1.0 3,853,882 + CCNA_03687 0.59 -1.4 3,853,905 - CCNA_03687 0.62 +0.7 3,853,906 - CCNA_03687 0.62 +1.2 3,853,915 - CCNA_03687 0.63 -0.7 3,853,915 - CCNA_03687 0.63 +1.6 3,853,926 - CCNA_03687 0.64 +0.4 3,853,935 + CCNA_03687 0.66 -1.3 3,853,944 + CCNA_03687 0.67 -0.1 3,853,957 - CCNA_03687 0.68 +3.3 3,853,959 + CCNA_03687 0.68 -1.3 3,853,959 + CCNA_03687 0.68 -3.7 3,853,959 + CCNA_03687 0.68 -2.5 3,853,959 + CCNA_03687 0.68 -2.5 3,853,959 + CCNA_03687 0.68 +0.3 3,853,959 + CCNA_03687 0.68 -2.0 3,853,959 + CCNA_03687 0.68 -1.4 3,853,959 + CCNA_03687 0.68 -1.9 3,853,967 - CCNA_03687 0.69 -2.2 3,853,967 - CCNA_03687 0.69 +1.3 3,853,967 - CCNA_03687 0.69 -1.0 3,853,967 - CCNA_03687 0.69 -0.7 3,853,967 - CCNA_03687 0.69 -0.6 3,853,967 - CCNA_03687 0.69 +0.7 3,853,967 - CCNA_03687 0.69 +0.6 3,853,967 - CCNA_03687 0.69 +0.4 3,853,994 + CCNA_03687 0.73 -1.7 3,854,001 + CCNA_03687 0.74 +1.1 3,854,001 + CCNA_03687 0.74 +0.5 3,854,001 + CCNA_03687 0.74 -1.4 3,854,009 - CCNA_03687 0.75 +0.8 3,854,009 - CCNA_03687 0.75 -0.1 3,854,034 - CCNA_03687 0.78 +2.7 3,854,046 + CCNA_03687 0.79 +1.7 3,854,046 + CCNA_03687 0.79 +1.0 3,854,054 - CCNA_03687 0.80 -0.2 3,854,070 - CCNA_03687 0.82 +0.4 3,854,137 - -1.4 3,854,150 - -1.0 3,854,168 - -0.7 3,854,253 + -1.3 3,854,253 + -2.8 3,854,253 + -1.6 3,854,268 + -3.1 3,854,276 - -1.3 3,854,286 - +3.3 3,854,319 - +2.6 3,854,319 - +2.7 3,854,325 + -0.5 3,854,325 + -1.5 3,854,333 - +3.1 3,854,333 - +2.6 3,854,354 - CCNA_03688 0.13 +2.6 3,854,354 - CCNA_03688 0.13 +2.3 3,854,354 - CCNA_03688 0.13 +2.5 3,854,354 - CCNA_03688 0.13 +2.6 3,854,355 - CCNA_03688 0.13 +2.5 3,854,356 + CCNA_03688 0.14 -0.6 3,854,367 - CCNA_03688 0.16 +2.9 3,854,468 - CCNA_03688 0.37 +2.1 3,854,468 - CCNA_03688 0.37 +2.0 3,854,469 - CCNA_03688 0.37 +2.5 3,854,485 + CCNA_03688 0.41 +2.0 3,854,488 - CCNA_03688 0.41 +2.0 3,854,493 - CCNA_03688 0.42 +2.1 3,854,523 - CCNA_03688 0.49 +2.2 3,854,564 + CCNA_03688 0.57 -0.8 3,854,564 + CCNA_03688 0.57 -0.3 3,854,588 + CCNA_03688 0.62 -1.0 3,854,621 - CCNA_03688 0.69 +2.1 3,854,658 - CCNA_03688 0.77 +1.7 3,854,678 + CCNA_03688 0.81 -0.9 3,854,806 + +1.1 3,854,934 + +2.3 3,854,934 + +4.3 3,854,934 + +2.3 3,854,942 - -1.4 3,854,942 - -2.0 3,854,942 - -1.6 3,854,971 + +2.4 3,854,974 - +2.7 3,855,029 + CCNA_03689 0.13 +3.0 3,855,033 + CCNA_03689 0.13 +2.8 3,855,036 - CCNA_03689 0.14 +1.4 3,855,074 + CCNA_03689 0.17 +3.2 3,855,074 + CCNA_03689 0.17 +2.8 3,855,103 + CCNA_03689 0.20 +3.0 3,855,103 + CCNA_03689 0.20 +2.6 3,855,103 + CCNA_03689 0.20 +2.8 3,855,103 + CCNA_03689 0.20 +2.7 3,855,111 - CCNA_03689 0.20 -1.7 3,855,118 - CCNA_03689 0.21 -2.9 3,855,155 + +3.7 3,855,155 + CCNA_03689 0.24 +3.5 3,855,163 - CCNA_03689 0.25 -0.3 3,855,205 + CCNA_03689 0.29 +2.7 3,855,205 + CCNA_03689 0.29 +3.1 3,855,205 + CCNA_03689 0.29 +2.6 3,855,224 + CCNA_03689 0.30 +3.7 3,855,305 + CCNA_03689 0.38 +3.6 3,855,328 - CCNA_03689 0.40 -2.2 3,855,364 - CCNA_03689 0.43 -0.8 3,855,369 - CCNA_03689 0.43 -2.3 3,855,383 + CCNA_03689 0.45 +3.4 3,855,391 - CCNA_03689 0.45 -1.0 3,855,409 - CCNA_03689 0.47 +1.5 3,855,480 + CCNA_03689 0.53 +2.5 3,855,518 - CCNA_03689 0.57 +1.1 3,855,545 + CCNA_03689 0.59 +2.6 3,855,571 + CCNA_03689 0.62 +2.7 3,855,571 + CCNA_03689 0.62 +2.5 3,855,571 + CCNA_03689 0.62 +2.3 3,855,579 - CCNA_03689 0.62 -1.1 3,855,599 + CCNA_03689 0.64 +3.3 3,855,599 + CCNA_03689 0.64 +3.4 3,855,634 - CCNA_03689 0.67 -1.2 3,855,646 + +4.3 3,855,646 + CCNA_03689 0.68 +3.2 3,855,646 + CCNA_03689 0.68 +3.1 3,855,654 - CCNA_03689 0.69 -0.5 3,855,654 - CCNA_03689 0.69 -2.0 3,855,663 - CCNA_03689 0.70 -1.2 3,855,666 + CCNA_03689 0.70 +3.6 3,855,700 - CCNA_03689 0.73 -1.0 3,855,705 + CCNA_03689 0.74 +3.4 3,855,705 + CCNA_03689 0.74 +3.1 3,855,705 + CCNA_03689 0.74 +3.5 3,855,729 + CCNA_03689 0.76 +2.9 3,855,737 + CCNA_03689 0.77 +3.1 3,855,737 - CCNA_03689 0.77 -2.6 3,855,743 + CCNA_03689 0.77 +3.1 3,855,764 + CCNA_03689 0.79 +2.9 3,855,764 + CCNA_03689 0.79 +3.1 3,855,764 + CCNA_03689 0.79 +3.4 3,855,764 + CCNA_03689 0.79 +3.7 3,855,764 + CCNA_03689 0.79 +2.7 3,855,764 + CCNA_03689 0.79 +3.2 3,855,764 + CCNA_03689 0.79 +3.5 3,855,764 + CCNA_03689 0.79 +3.5 3,855,764 + CCNA_03689 0.79 +3.3 3,855,764 + CCNA_03689 0.79 +3.6 3,855,764 + CCNA_03689 0.79 +3.7 3,855,764 + CCNA_03689 0.79 +3.1 3,855,764 + CCNA_03689 0.79 +2.7
Or see this region's nucleotide sequence