Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03436

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,599,020	+		CCNA_03435	0.28	+2.2
3,599,020	+		CCNA_03435	0.28	-0.2
3,599,040	+		CCNA_03435	0.29	+1.1
3,599,040	+		CCNA_03435	0.29	+1.0
3,599,071	+		CCNA_03435	0.32	+1.1
3,599,082	-		CCNA_03435	0.32	-1.1
3,599,088	+		CCNA_03435	0.33	+2.3
3,599,093	+		CCNA_03435	0.33	+1.7
3,599,106	-		CCNA_03435	0.34	-1.0
3,599,109	+		CCNA_03435	0.34	-0.7
3,599,138	+		CCNA_03435	0.36	-0.8
3,599,138	+		CCNA_03435	0.36	+0.6
3,599,141	-		CCNA_03435	0.37	-0.6
3,599,146	-		CCNA_03435	0.37	-1.4
3,599,175	-		CCNA_03435	0.39	-0.4
3,599,182	+		CCNA_03435	0.40	-0.2
3,599,185	-		CCNA_03435	0.40	+0.5
3,599,205	+		CCNA_03435	0.41	+0.1
3,599,205	+		CCNA_03435	0.41	-1.5
3,599,213	-		CCNA_03435	0.42	+0.2
3,599,213	-		CCNA_03435	0.42	+0.3
3,599,213	-		CCNA_03435	0.42	-0.0
3,599,237	-		CCNA_03435	0.44	+1.6
3,599,239	+		CCNA_03435	0.44	-1.1
3,599,239	+		CCNA_03435	0.44	+1.1
3,599,244	+		CCNA_03435	0.44	+0.4
3,599,244	+		CCNA_03435	0.44	+0.1
3,599,249	+		CCNA_03435	0.45	+1.0
3,599,249	+		CCNA_03435	0.45	+0.1
3,599,286	-		CCNA_03435	0.47	-1.8
3,599,290	+		CCNA_03435	0.48	-0.3
3,599,306	+		CCNA_03435	0.49	+0.6
3,599,306	+		CCNA_03435	0.49	+1.3
3,599,332	+		CCNA_03435	0.51	+0.7
3,599,374	+		CCNA_03435	0.54	+2.0
3,599,404	+		CCNA_03435	0.56	-0.4
3,599,463	+		CCNA_03435	0.60	+1.1
3,599,476	-		CCNA_03435	0.61	+1.2
3,599,476	-		CCNA_03435	0.61	-0.9
3,599,488	-		CCNA_03435	0.62	-1.3
3,599,498	-		CCNA_03435	0.63	-0.6
3,599,519	+		CCNA_03435	0.64	-1.6
3,599,521	+		CCNA_03435	0.64	-0.7
3,599,555	-		CCNA_03435	0.67	-0.0
3,599,582	+		CCNA_03435	0.69	+0.5
3,599,582	+		CCNA_03435	0.69	+0.1
3,599,592	+		CCNA_03435	0.70	-1.0
3,599,594	+		CCNA_03435	0.70	-0.1
3,599,594	+		CCNA_03435	0.70	+0.3
3,599,599	+		CCNA_03435	0.70	+0.2
3,599,600	+		CCNA_03435	0.70	-1.9
3,599,600	-		CCNA_03435	0.70	+0.2
3,599,610	-		CCNA_03435	0.71	-0.0
3,599,638	+		CCNA_03435	0.73	+0.4
3,599,676	+		CCNA_03435	0.76	+1.5
3,599,711	-		CCNA_03435	0.78	-1.5
3,599,738	-		CCNA_03435	0.80	+0.6
3,599,830	-				+1.2
3,599,847	+		CCNA_03435	0.88	+0.8
3,599,878	+				+1.5
3,599,886	-				-2.6
3,599,899	+				+0.7
3,599,967	+				+0.8
3,599,975	-				+1.0
3,600,009	+				+0.9
3,600,040	+				-0.4
3,600,088	+				+0.2
3,600,136	-				-0.7
3,600,145	+				-0.0
3,600,145	+				-0.6
3,600,145	+				-0.7
3,600,145	+				-1.6
3,600,153	-				-2.8
3,600,153	-				-0.6
3,600,156	+				+0.7
3,600,179	+				-0.2
3,600,187	-				+1.2
3,600,206	+				+1.0
3,600,212	+				-0.4
3,600,216	+				-0.7
3,600,288	+		CCNA_03436	0.12	-0.4
3,600,288	+		CCNA_03436	0.12	-1.0
3,600,340	+		CCNA_03436	0.15	-1.7
3,600,340	+		CCNA_03436	0.15	+0.5
3,600,347	+		CCNA_03436	0.15	-1.9
3,600,348	-		CCNA_03436	0.15	-2.9
3,600,348	-		CCNA_03436	0.15	-1.2
3,600,355	-		CCNA_03436	0.15	-0.4
3,600,384	+		CCNA_03436	0.16	-0.5
3,600,384	+		CCNA_03436	0.16	+0.0
3,600,384	+		CCNA_03436	0.16	+0.8
3,600,418	+		CCNA_03436	0.18	-2.1
3,600,476	+		CCNA_03436	0.21	+0.6
3,600,489	-		CCNA_03436	0.21	-1.8
3,600,497	+		CCNA_03436	0.21	-0.9
3,600,524	+		CCNA_03436	0.23	+0.0
3,600,560	+		CCNA_03436	0.24	+0.7
3,600,563	-		CCNA_03436	0.24	+1.2
3,600,575	+		CCNA_03436	0.25	-0.8
3,600,626	+		CCNA_03436	0.27	-0.9
3,600,634	-		CCNA_03436	0.27	+1.4
3,600,648	-		CCNA_03436	0.28	-2.4
3,600,648	-		CCNA_03436	0.28	-3.6
3,600,721	+		CCNA_03436	0.31	-0.5
3,600,761	+		CCNA_03436	0.33	+3.0
3,600,772	+		CCNA_03436	0.33	+0.1
3,600,774	-		CCNA_03436	0.34	-3.1
3,600,811	+		CCNA_03436	0.35	+0.7
3,600,816	+		CCNA_03436	0.35	+0.9
3,600,843	+		CCNA_03436	0.37	-0.2
3,600,886	+		CCNA_03436	0.38	+0.1
3,600,916	-		CCNA_03436	0.40	-1.5
3,600,931	-		CCNA_03436	0.40	-2.2
3,600,972	-		CCNA_03436	0.42	-0.4
3,601,005	-		CCNA_03436	0.44	-2.2
3,601,020	+		CCNA_03436	0.44	-0.3
3,601,020	+		CCNA_03436	0.44	+0.0
3,601,020	+		CCNA_03436	0.44	+0.7
3,601,020	+		CCNA_03436	0.44	+0.3
3,601,020	+		CCNA_03436	0.44	-0.2
3,601,020	+		CCNA_03436	0.44	+1.2
3,601,028	-		CCNA_03436	0.45	-2.4
3,601,028	-		CCNA_03436	0.45	+0.5
3,601,028	-		CCNA_03436	0.45	-1.4
3,601,028	-		CCNA_03436	0.45	+1.2
3,601,028	-		CCNA_03436	0.45	-2.6
3,601,028	-		CCNA_03436	0.45	-2.8
3,601,028	-		CCNA_03436	0.45	-1.0
3,601,028	-		CCNA_03436	0.45	+1.5
3,601,028	-		CCNA_03436	0.45	-1.7
3,601,028	-		CCNA_03436	0.45	-1.1
3,601,028	-		CCNA_03436	0.45	+0.2
3,601,028	-		CCNA_03436	0.45	-0.5
3,601,031	+		CCNA_03436	0.45	-0.3
3,601,036	+		CCNA_03436	0.45	-1.0
3,601,067	+		CCNA_03436	0.46	+0.7
3,601,075	-		CCNA_03436	0.47	-1.3
3,601,086	+		CCNA_03436	0.47	+0.4
3,601,089	-		CCNA_03436	0.47	+1.2
3,601,094	-		CCNA_03436	0.48	+0.5
3,601,102	+		CCNA_03436	0.48	+0.5
3,601,110	-		CCNA_03436	0.48	-2.7
3,601,154	-		CCNA_03436	0.50	-1.9
3,601,172	+		CCNA_03436	0.51	-1.4
3,601,208	-		CCNA_03436	0.53	-2.4
3,601,225	-				+1.8
3,601,276	+		CCNA_03436	0.56	+1.3
3,601,281	+		CCNA_03436	0.56	-0.3
3,601,287	-		CCNA_03436	0.56	+1.2
3,601,296	+		CCNA_03436	0.56	+1.2
3,601,348	+		CCNA_03436	0.59	-0.5
3,601,356	-		CCNA_03436	0.59	+0.5
3,601,367	-		CCNA_03436	0.59	-0.7
3,601,369	+		CCNA_03436	0.60	-0.8
3,601,378	+		CCNA_03436	0.60	+1.8
3,601,378	+		CCNA_03436	0.60	-0.5
3,601,378	+		CCNA_03436	0.60	+1.2
3,601,378	+		CCNA_03436	0.60	-1.9
3,601,378	+		CCNA_03436	0.60	+0.6
3,601,378	+		CCNA_03436	0.60	-0.2
3,601,386	-		CCNA_03436	0.60	-0.0
3,601,386	-		CCNA_03436	0.60	+0.4
3,601,386	-		CCNA_03436	0.60	-0.9
3,601,386	-		CCNA_03436	0.60	-3.8
3,601,386	-		CCNA_03436	0.60	-2.7
3,601,386	-		CCNA_03436	0.60	-3.7
3,601,386	-		CCNA_03436	0.60	-1.0
3,601,386	-		CCNA_03436	0.60	-0.2
3,601,388	+		CCNA_03436	0.60	-1.9
3,601,410	-		CCNA_03436	0.61	-1.6
3,601,448	+		CCNA_03436	0.63	-0.6
3,601,468	-		CCNA_03436	0.64	-0.4
3,601,484	+		CCNA_03436	0.65	+0.1
3,601,540	+		CCNA_03436	0.67	+1.5
3,601,545	-		CCNA_03436	0.67	-0.5
3,601,561	-		CCNA_03436	0.68	+1.5
3,601,629	-		CCNA_03436	0.71	-1.7
3,601,652	+		CCNA_03436	0.72	-0.5
3,601,666	+		CCNA_03436	0.73	+2.3
3,601,688	+		CCNA_03436	0.74	-0.4
3,601,688	+		CCNA_03436	0.74	+0.3
3,601,706	-		CCNA_03436	0.74	-1.2
3,601,706	-		CCNA_03436	0.74	-1.0
3,601,706	-		CCNA_03436	0.74	+0.2
3,601,785	+		CCNA_03436	0.78	-0.4
3,601,807	+		CCNA_03436	0.79	+0.1
3,601,816	-		CCNA_03436	0.79	-1.6
3,601,856	-		CCNA_03436	0.81	-1.9
3,601,857	-		CCNA_03436	0.81	-0.4
3,601,867	-		CCNA_03436	0.81	+1.3
3,601,880	+		CCNA_03436	0.82	-1.3
3,601,914	-		CCNA_03436	0.83	-1.5
3,601,915	-		CCNA_03436	0.83	-2.7
3,601,925	+		CCNA_03436	0.84	-0.4
3,601,962	+		CCNA_03436	0.86	-1.3
3,601,985	+		CCNA_03436	0.87	-0.1
3,602,007	+		CCNA_03436	0.87	-0.8
3,602,022	+		CCNA_03436	0.88	+3.8
3,602,025	-		CCNA_03436	0.88	-1.2
3,602,103	+				-1.7
3,602,113	+				+0.9
3,602,113	+				-0.7
3,602,134	+				+0.8
3,602,135	+				-1.0
3,602,135	+				-0.5
3,602,162	+				+0.1
3,602,164	-				-1.4
3,602,164	-				-0.2
3,602,167	+				+1.0
3,602,170	-				+1.8
3,602,170	-				-0.3
3,602,170	-				-0.0
3,602,170	-				-2.0
3,602,184	+				-0.3
3,602,206	+				-1.4
3,602,273	+				-0.2
3,602,281	-				-0.7
3,602,287	+				+0.4
3,602,307	+				+1.5
3,602,414	+		CCNA_03437	0.25	-2.6
3,602,416	-		CCNA_03437	0.26	-0.6
3,602,422	-		CCNA_03437	0.27	+1.3
3,602,444	-		CCNA_03437	0.31	-0.1
3,602,479	-		CCNA_03437	0.38	-0.0
3,602,495	+		CCNA_03437	0.41	-0.2
3,602,503	-		CCNA_03437	0.43	-2.0
3,602,548	+		CCNA_03437	0.52	+1.3
3,602,556	-		CCNA_03437	0.54	+0.1
3,602,595	+		CCNA_03437	0.61	-1.2
3,602,604	+		CCNA_03437	0.63	-0.4
3,602,604	+		CCNA_03437	0.63	-1.7
3,602,604	+		CCNA_03437	0.63	-1.1
3,602,612	-		CCNA_03437	0.65	+0.0
3,602,612	-		CCNA_03437	0.65	-1.0
3,602,612	-		CCNA_03437	0.65	+2.8
3,602,612	-				+1.8
3,602,616	+		CCNA_03437	0.66	-2.8
3,602,639	-		CCNA_03437	0.70	-1.9
3,602,665	+		CCNA_03437	0.76	+0.5
3,602,672	-		CCNA_03437	0.77	+3.0
3,602,672	-		CCNA_03437	0.77	+0.5
3,602,672	-		CCNA_03437	0.77	+1.1
3,602,709	-		CCNA_03437	0.84	-0.7
3,602,711	+		CCNA_03437	0.85	-2.6
3,602,748	+				-3.2
3,602,754	+				-1.9
3,602,756	-				+0.6
3,602,759	+				+0.8
3,602,759	+				-0.8
3,602,759	+				-0.2
3,602,767	-				+0.0
3,602,767	-				+1.6
3,602,777	+				-2.7
3,602,848	+				-1.2
3,602,856	-				+1.1
3,602,861	-				-1.8
3,602,864	+				-1.8
3,602,872	-		CCNA_03438	0.12	+0.5
3,602,875	-		CCNA_03438	0.13	+0.9
3,602,875	-		CCNA_03438	0.13	+0.4
3,602,886	+		CCNA_03438	0.16	+0.1
3,602,892	+		CCNA_03438	0.18	-0.1
3,602,900	-		CCNA_03438	0.20	+0.3
3,602,900	-		CCNA_03438	0.20	-0.4
3,602,920	-		CCNA_03438	0.26	+1.7
3,602,930	-		CCNA_03438	0.29	-1.5
3,602,930	-		CCNA_03438	0.29	-1.8
3,603,015	+		CCNA_03438	0.55	-1.1
3,603,044	-		CCNA_03438	0.64	+0.4
3,603,095	+		CCNA_03438	0.79	-1.4
3,603,122	+		CCNA_03438	0.88	-1.9
3,603,122	+		CCNA_03438	0.88	-0.0
3,603,123	+		CCNA_03438	0.88	-1.0
3,603,143	+				-1.6
3,603,143	+				-2.4
3,603,178	+				-2.6
3,603,216	+				-1.3
3,603,216	+				-1.1
3,603,224	+				-2.4
3,603,225	-				+0.8
3,603,243	-				-1.9
3,603,290	-		CCNA_03439	0.21	+0.5