Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03098

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
3,248,391	+		CCNA_03097	0.19	-0.3
3,248,391	-		CCNA_03097	0.19	+2.9
3,248,399	-		CCNA_03097	0.20	+0.6
3,248,410	+		CCNA_03097	0.21	-0.3
3,248,451	+		CCNA_03097	0.25	-1.7
3,248,459	-		CCNA_03097	0.26	+1.5
3,248,459	-		CCNA_03097	0.26	+1.5
3,248,460	+		CCNA_03097	0.26	-1.3
3,248,489	-		CCNA_03097	0.29	+0.3
3,248,498	+		CCNA_03097	0.30	-1.4
3,248,540	-		CCNA_03097	0.34	+1.5
3,248,560	-		CCNA_03097	0.36	+0.2
3,248,650	-		CCNA_03097	0.45	-0.7
3,248,683	+		CCNA_03097	0.48	-1.7
3,248,688	+		CCNA_03097	0.49	-1.0
3,248,688	+		CCNA_03097	0.49	+1.1
3,248,718	+		CCNA_03097	0.52	-1.5
3,248,742	+		CCNA_03097	0.54	+1.8
3,248,742	+		CCNA_03097	0.54	+1.5
3,248,742	+		CCNA_03097	0.54	+1.3
3,248,750	-		CCNA_03097	0.55	-1.3
3,248,750	-		CCNA_03097	0.55	-0.2
3,248,762	+		CCNA_03097	0.56	-0.0
3,248,770	-		CCNA_03097	0.57	+1.5
3,248,784	+		CCNA_03097	0.58	-1.4
3,248,784	+		CCNA_03097	0.58	+1.0
3,248,808	+		CCNA_03097	0.61	-2.8
3,248,860	-		CCNA_03097	0.66	-0.2
3,248,902	-		CCNA_03097	0.70	+0.2
3,248,929	-		CCNA_03097	0.73	+0.5
3,248,967	-				+0.3
3,248,982	-		CCNA_03097	0.78	-2.3
3,249,000	-		CCNA_03097	0.80	-0.7
3,249,000	-		CCNA_03097	0.80	-2.4
3,249,041	-		CCNA_03097	0.84	-0.4
3,249,058	+		CCNA_03097	0.86	-1.7
3,249,058	+		CCNA_03097	0.86	-0.4
3,249,064	+		CCNA_03097	0.86	-1.5
3,249,064	+		CCNA_03097	0.86	-1.3
3,249,068	-		CCNA_03097	0.87	-0.5
3,249,076	-		CCNA_03097	0.87	-0.7
3,249,076	-		CCNA_03097	0.87	-1.3
3,249,091	+		CCNA_03097	0.89	-1.5
3,249,091	+		CCNA_03097	0.89	+1.3
3,249,091	+		CCNA_03097	0.89	-1.5
3,249,110	+				+0.3
3,249,110	+				-0.5
3,249,118	-				-1.5
3,249,120	+				-0.5
3,249,128	+				+1.3
3,249,131	-				-0.4
3,249,131	-				-0.7
3,249,131	-				-2.6
3,249,131	-				-0.1
3,249,131	-				-2.2
3,249,131	-				-0.9
3,249,131	-				-1.6
3,249,136	-				-0.3
3,249,136	-				-1.0
3,249,136	-				-0.3
3,249,136	-				+0.1
3,249,136	-				+0.7
3,249,142	-				+0.2
3,249,149	+				+0.1
3,249,157	-				+1.9
3,249,161	+				-0.2
3,249,161	+				-2.0
3,249,170	-				-0.2
3,249,177	-				-0.4
3,249,177	-				+0.7
3,249,187	+				-0.6
3,249,199	+				+0.9
3,249,204	+				-2.2
3,249,212	-				-1.1
3,249,245	+				-1.0
3,249,251	+				+0.6
3,249,259	-				-2.3
3,249,313	+				+0.3
3,249,359	+				-0.4
3,249,372	-				-1.0
3,249,377	-				+0.5
3,249,415	+				+1.5
3,249,436	+				-1.0
3,249,450	+				+0.3
3,249,450	+				+1.0
3,249,458	-				-0.9
3,249,478	+				-0.7
3,249,478	+				-0.1
3,249,478	+				-0.8
3,249,486	-		CCNA_03098	0.10	-1.3
3,249,488	-		CCNA_03098	0.10	-1.6
3,249,488	-		CCNA_03098	0.10	-1.2
3,249,488	-		CCNA_03098	0.10	-0.5
3,249,506	-		CCNA_03098	0.12	-1.7
3,249,511	+		CCNA_03098	0.13	-0.2
3,249,519	-		CCNA_03098	0.13	-1.0
3,249,545	+		CCNA_03098	0.16	+0.1
3,249,545	+		CCNA_03098	0.16	-0.4
3,249,547	+		CCNA_03098	0.16	+1.3
3,249,547	+		CCNA_03098	0.16	+1.7
3,249,555	-		CCNA_03098	0.17	-0.4
3,249,560	+		CCNA_03098	0.18	-0.0
3,249,584	+		CCNA_03098	0.20	+0.2
3,249,584	+		CCNA_03098	0.20	+0.8
3,249,584	+		CCNA_03098	0.20	+0.3
3,249,584	+		CCNA_03098	0.20	-0.1
3,249,584	+		CCNA_03098	0.20	+0.3
3,249,592	-		CCNA_03098	0.21	+0.0
3,249,592	-		CCNA_03098	0.21	-1.8
3,249,594	+		CCNA_03098	0.21	-0.3
3,249,594	+		CCNA_03098	0.21	-0.6
3,249,597	-		CCNA_03098	0.22	+0.6
3,249,611	-		CCNA_03098	0.23	-1.3
3,249,713	-		CCNA_03098	0.34	-1.4
3,249,721	+		CCNA_03098	0.35	-0.7
3,249,721	+		CCNA_03098	0.35	-1.1
3,249,728	+		CCNA_03098	0.35	+0.3
3,249,728	+		CCNA_03098	0.35	+0.3
3,249,728	+		CCNA_03098	0.35	+0.1
3,249,729	-		CCNA_03098	0.36	-0.2
3,249,736	-		CCNA_03098	0.36	-1.7
3,249,736	-		CCNA_03098	0.36	+1.7
3,249,742	-		CCNA_03098	0.37	+1.2
3,249,764	+		CCNA_03098	0.39	+0.8
3,249,764	+		CCNA_03098	0.39	+0.1
3,249,772	-		CCNA_03098	0.40	+0.1
3,249,772	-		CCNA_03098	0.40	-2.2
3,249,772	-		CCNA_03098	0.40	-0.7
3,249,772	-		CCNA_03098	0.40	-0.9
3,249,829	-		CCNA_03098	0.46	+0.7
3,249,831	+		CCNA_03098	0.46	+0.6
3,249,831	+		CCNA_03098	0.46	+0.4
3,249,845	+		CCNA_03098	0.48	+0.6
3,249,845	+		CCNA_03098	0.48	+1.1
3,249,853	-		CCNA_03098	0.49	-0.5
3,249,862	-		CCNA_03098	0.50	-0.8
3,249,881	+		CCNA_03098	0.52	+1.9
3,249,881	+		CCNA_03098	0.52	+2.7
3,249,882	+		CCNA_03098	0.52	+1.8
3,249,882	+		CCNA_03098	0.52	+1.4
3,249,890	-		CCNA_03098	0.52	+0.9
3,249,890	-		CCNA_03098	0.52	+0.9
3,249,890	-		CCNA_03098	0.52	-0.5
3,249,890	-		CCNA_03098	0.52	-3.1
3,249,896	-		CCNA_03098	0.53	-1.5
3,249,921	+		CCNA_03098	0.56	-0.5
3,249,931	+		CCNA_03098	0.57	+0.4
3,249,968	-		CCNA_03098	0.61	+1.3
3,249,980	-		CCNA_03098	0.62	-2.1
3,250,078	+		CCNA_03098	0.72	-0.1
3,250,078	+		CCNA_03098	0.72	+0.9
3,250,087	+		CCNA_03098	0.73	-0.1
3,250,122	+		CCNA_03098	0.77	+0.4
3,250,123	-		CCNA_03098	0.77	-1.2
3,250,128	+		CCNA_03098	0.77	+0.6
3,250,136	-		CCNA_03098	0.78	-0.9
3,250,138	+		CCNA_03098	0.79	+0.6
3,250,141	-		CCNA_03098	0.79	+0.5
3,250,143	+		CCNA_03098	0.79	+0.9
3,250,144	+		CCNA_03098	0.79	-0.1
3,250,146	-		CCNA_03098	0.79	+0.0
3,250,159	-		CCNA_03098	0.81	-0.1
3,250,175	+		CCNA_03098	0.82	-0.6
3,250,188	-		CCNA_03098	0.84	+1.3
3,250,207	-		CCNA_03098	0.86	-0.4
3,250,220	+		CCNA_03098	0.87	+0.2
3,250,220	+		CCNA_03098	0.87	+1.3
3,250,222	-		CCNA_03098	0.87	+1.2
3,250,226	+		CCNA_03098	0.88	+0.6
3,250,228	-		CCNA_03098	0.88	-1.3
3,250,232	-		CCNA_03098	0.88	-0.5
3,250,232	-		CCNA_03098	0.88	-0.0
3,250,269	-				-0.2
3,250,283	+				+0.3
3,250,288	+				-0.2
3,250,296	-				-1.0
3,250,304	+				+0.7
3,250,324	-				-0.5
3,250,336	+				-0.8
3,250,341	+				-1.8
3,250,353	+				+1.8
3,250,387	-				+0.1
3,250,434	-		CCNA_03099	0.12	-0.5
3,250,437	+		CCNA_03099	0.13	+0.2
3,250,440	-		CCNA_03099	0.13	-0.2
3,250,446	+		CCNA_03099	0.14	+0.1
3,250,446	+		CCNA_03099	0.14	-1.5
3,250,446	+		CCNA_03099	0.14	-2.9
3,250,446	+		CCNA_03099	0.14	+2.5
3,250,454	-		CCNA_03099	0.15	-1.8
3,250,454	-		CCNA_03099	0.15	-0.4
3,250,454	-		CCNA_03099	0.15	-0.4
3,250,455	-		CCNA_03099	0.15	+0.5
3,250,456	+		CCNA_03099	0.15	+2.1
3,250,456	+		CCNA_03099	0.15	+1.7
3,250,456	+		CCNA_03099	0.15	+2.7
3,250,456	+		CCNA_03099	0.15	+1.8
3,250,464	-		CCNA_03099	0.16	-0.8
3,250,494	+		CCNA_03099	0.20	+0.1
3,250,494	+		CCNA_03099	0.20	-1.0
3,250,496	-		CCNA_03099	0.21	+1.3
3,250,502	-				+3.5
3,250,502	-		CCNA_03099	0.21	+1.9
3,250,502	-		CCNA_03099	0.21	-1.1
3,250,646	+		CCNA_03099	0.41	-1.5
3,250,654	+		CCNA_03099	0.42	+0.3
3,250,662	-		CCNA_03099	0.43	-2.6
3,250,664	+		CCNA_03099	0.43	-1.4
3,250,664	+		CCNA_03099	0.43	+0.1
3,250,664	+		CCNA_03099	0.43	-2.1
3,250,672	-		CCNA_03099	0.44	-1.4
3,250,672	-		CCNA_03099	0.44	+0.1
3,250,672	-		CCNA_03099	0.44	-0.9
3,250,672	-		CCNA_03099	0.44	+1.3
3,250,699	-		CCNA_03099	0.48	-0.8
3,250,704	+		CCNA_03099	0.49	+1.0
3,250,712	-		CCNA_03099	0.50	-1.0
3,250,732	-		CCNA_03099	0.52	-0.4
3,250,745	+		CCNA_03099	0.54	-1.0
3,250,752	+		CCNA_03099	0.55	-0.8
3,250,753	-		CCNA_03099	0.55	-0.8
3,250,758	+		CCNA_03099	0.56	-3.3
3,250,764	+		CCNA_03099	0.57	+0.9
3,250,779	+		CCNA_03099	0.59	+1.1
3,250,796	-		CCNA_03099	0.61	-0.8
3,250,798	+		CCNA_03099	0.61	+0.3
3,250,841	+		CCNA_03099	0.67	-0.5
3,250,849	-		CCNA_03099	0.68	-1.7
3,250,885	-		CCNA_03099	0.73	+0.8
3,250,901	-		CCNA_03099	0.75	-1.8
3,250,982	-		CCNA_03099	0.86	-1.0
3,251,003	-		CCNA_03099	0.89	+0.3
3,251,070	+				+2.1
3,251,107	+				-1.8
3,251,121	+				-1.6
3,251,121	+				-1.4
3,251,121	+				-1.4
3,251,121	+				+1.0
3,251,132	+				-3.6
3,251,135	-				-0.4
3,251,135	-				+0.8
3,251,163	+		CCNA_03100	0.13	-1.2
3,251,163	+		CCNA_03100	0.13	-1.1
3,251,170	+		CCNA_03100	0.16	+0.1
3,251,171	-		CCNA_03100	0.17	+1.6
3,251,171	-		CCNA_03100	0.17	+0.1
3,251,179	-		CCNA_03100	0.20	+0.5
3,251,202	+		CCNA_03100	0.31	-1.9
3,251,215	+		CCNA_03100	0.36	+0.4
3,251,228	+		CCNA_03100	0.42	+1.5
3,251,228	+		CCNA_03100	0.42	-0.7
3,251,236	-		CCNA_03100	0.46	-0.4
3,251,248	+		CCNA_03100	0.51	-0.0
3,251,256	-		CCNA_03100	0.55	-1.1
3,251,261	-		CCNA_03100	0.57	-0.0
3,251,270	+		CCNA_03100	0.61	-2.4
3,251,271	-		CCNA_03100	0.62	-2.0
3,251,276	+		CCNA_03100	0.64	+2.9
3,251,276	+		CCNA_03100	0.64	+2.9
3,251,276	+		CCNA_03100	0.64	+2.8
3,251,276	+		CCNA_03100	0.64	+1.9
3,251,284	-		CCNA_03100	0.68	-0.3
3,251,285	+		CCNA_03100	0.68	+1.0
3,251,293	-		CCNA_03100	0.72	-2.0
3,251,314	+		CCNA_03100	0.81	-0.1