Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02121 and CCNA_02122 overlap by 4 nucleotides CCNA_02122 and CCNA_02123 are separated by 335 nucleotides CCNA_02123 and CCNA_02124 are separated by 144 nucleotides
CCNA_02121: CCNA_02121 - ATP-dependent helicase, at 2,271,309 to 2,273,888
_02121
CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data) , at 2,273,885 to 2,274,592
_02122
CCNA_02123: CCNA_02123 - transposase, at 2,274,928 to 2,275,422
_02123
CCNA_02124: CCNA_02124 - hypothetical protein, at 2,275,567 to 2,276,028
_02124
Position (kb)
2273
2274
2275 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2272.906 kb on - strand, within CCNA_02121 at 2273.015 kb on + strand at 2273.018 kb on - strand, within CCNA_02121 at 2273.023 kb on - strand, within CCNA_02121 at 2273.101 kb on + strand, within CCNA_02121 at 2273.117 kb on + strand, within CCNA_02121 at 2273.160 kb on - strand, within CCNA_02121 at 2273.178 kb on - strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.190 kb on + strand, within CCNA_02121 at 2273.252 kb on + strand, within CCNA_02121 at 2273.260 kb on - strand, within CCNA_02121 at 2273.260 kb on - strand, within CCNA_02121 at 2273.277 kb on + strand at 2273.311 kb on + strand, within CCNA_02121 at 2273.320 kb on + strand, within CCNA_02121 at 2273.333 kb on - strand, within CCNA_02121 at 2273.337 kb on + strand, within CCNA_02121 at 2273.345 kb on - strand, within CCNA_02121 at 2273.373 kb on - strand, within CCNA_02121 at 2273.425 kb on + strand, within CCNA_02121 at 2273.434 kb on + strand, within CCNA_02121 at 2273.479 kb on + strand, within CCNA_02121 at 2273.488 kb on - strand, within CCNA_02121 at 2273.496 kb on + strand, within CCNA_02121 at 2273.561 kb on + strand, within CCNA_02121 at 2273.615 kb on + strand, within CCNA_02121 at 2273.618 kb on - strand, within CCNA_02121 at 2273.623 kb on - strand, within CCNA_02121 at 2273.623 kb on - strand, within CCNA_02121 at 2273.637 kb on + strand at 2273.759 kb on + strand at 2273.759 kb on + strand at 2273.762 kb on - strand at 2273.765 kb on + strand at 2273.780 kb on - strand at 2273.974 kb on + strand, within CCNA_02122 at 2273.974 kb on + strand, within CCNA_02122 at 2273.995 kb on + strand, within CCNA_02122 at 2274.061 kb on - strand, within CCNA_02122 at 2274.089 kb on - strand, within CCNA_02122 at 2274.183 kb on + strand, within CCNA_02122 at 2274.207 kb on + strand, within CCNA_02122 at 2274.219 kb on + strand, within CCNA_02122 at 2274.229 kb on + strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.269 kb on - strand, within CCNA_02122 at 2274.270 kb on - strand, within CCNA_02122 at 2274.280 kb on - strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.375 kb on - strand, within CCNA_02122 at 2274.380 kb on + strand, within CCNA_02122 at 2274.453 kb on - strand, within CCNA_02122 at 2274.532 kb on - strand at 2274.556 kb on - strand at 2274.576 kb on - strand at 2275.412 kb on + strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 2,272,906 - CCNA_02121 0.62 -1.5 2,273,015 + +1.9 2,273,018 - CCNA_02121 0.66 -1.6 2,273,023 - CCNA_02121 0.66 -1.0 2,273,101 + CCNA_02121 0.69 -2.1 2,273,117 + CCNA_02121 0.70 -0.1 2,273,160 - CCNA_02121 0.72 -1.1 2,273,178 - CCNA_02121 0.72 +1.3 2,273,190 + CCNA_02121 0.73 -0.9 2,273,190 + CCNA_02121 0.73 -1.0 2,273,190 + CCNA_02121 0.73 -0.1 2,273,190 + CCNA_02121 0.73 -1.7 2,273,252 + CCNA_02121 0.75 -2.0 2,273,260 - CCNA_02121 0.76 -0.6 2,273,260 - CCNA_02121 0.76 -0.2 2,273,277 + +1.9 2,273,311 + CCNA_02121 0.78 +0.1 2,273,320 + CCNA_02121 0.78 +2.3 2,273,333 - CCNA_02121 0.78 +0.0 2,273,337 + CCNA_02121 0.79 -0.5 2,273,345 - CCNA_02121 0.79 -0.3 2,273,373 - CCNA_02121 0.80 +0.9 2,273,425 + CCNA_02121 0.82 -0.3 2,273,434 + CCNA_02121 0.82 +1.2 2,273,479 + CCNA_02121 0.84 -1.4 2,273,488 - CCNA_02121 0.84 -0.6 2,273,496 + CCNA_02121 0.85 +0.3 2,273,561 + CCNA_02121 0.87 +1.3 2,273,615 + CCNA_02121 0.89 -0.6 2,273,618 - CCNA_02121 0.89 -1.9 2,273,623 - CCNA_02121 0.90 +1.5 2,273,623 - CCNA_02121 0.90 -0.8 2,273,637 + -1.6 2,273,759 + -1.0 2,273,759 + +0.3 2,273,762 - -1.3 2,273,765 + +0.2 2,273,780 - -3.6 2,273,974 + CCNA_02122 0.13 -2.6 2,273,974 + CCNA_02122 0.13 -2.5 2,273,995 + CCNA_02122 0.16 -1.7 2,274,061 - CCNA_02122 0.25 +1.3 2,274,089 - CCNA_02122 0.29 -1.0 2,274,183 + CCNA_02122 0.42 +0.7 2,274,207 + CCNA_02122 0.45 -0.8 2,274,219 + CCNA_02122 0.47 +1.3 2,274,229 + CCNA_02122 0.49 +0.2 2,274,237 - CCNA_02122 0.50 -2.4 2,274,237 - CCNA_02122 0.50 -0.8 2,274,269 - CCNA_02122 0.54 -2.6 2,274,270 - CCNA_02122 0.54 -0.7 2,274,280 - CCNA_02122 0.56 +0.1 2,274,367 + CCNA_02122 0.68 -2.3 2,274,367 + CCNA_02122 0.68 -0.7 2,274,375 - CCNA_02122 0.69 -0.4 2,274,380 + CCNA_02122 0.70 +0.5 2,274,453 - CCNA_02122 0.80 -1.1 2,274,532 - -0.3 2,274,556 - +0.6 2,274,576 - -0.6 2,275,412 + +0.3 2,275,463 - +0.1 2,275,463 - +1.2 2,275,463 - -0.3 2,275,463 - +0.0 2,275,463 - -0.4 2,275,463 - -0.3 2,275,463 - -0.9
Or see this region's nucleotide sequence