Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02066 and CCNA_02067 are separated by 71 nucleotides CCNA_02067 and CCNA_02068 are separated by 95 nucleotides CCNA_02068 and CCNA_02069 overlap by 1 nucleotides CCNA_02069 and CCNA_02070 are separated by 0 nucleotides
CCNA_02066: CCNA_02066 - phytoene/squalene synthase family protein, at 2,218,017 to 2,218,730
_02066
CCNA_02067: CCNA_02067 - conserved membrane spanning protein, at 2,218,802 to 2,219,416
_02067
CCNA_02068: CCNA_02068 - Mth938-like membrane protein, at 2,219,512 to 2,219,865
_02068
CCNA_02069: CCNA_02069 - protein translocase subunit secF, at 2,219,865 to 2,220,830
_02069
CCNA_02070: CCNA_02070 - protein translocase subunit secD, at 2,220,831 to 2,222,429
_02070
Position (kb)
2219
2220 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2218.726 kb on + strand at 2218.771 kb on + strand at 2218.771 kb on + strand at 2218.779 kb on - strand at 2218.807 kb on - strand at 2218.825 kb on + strand at 2218.858 kb on + strand at 2218.863 kb on - strand at 2218.866 kb on - strand at 2218.904 kb on - strand, within CCNA_02067 at 2218.904 kb on - strand, within CCNA_02067 at 2218.904 kb on - strand, within CCNA_02067 at 2218.904 kb on - strand, within CCNA_02067 at 2218.904 kb on - strand, within CCNA_02067 at 2218.910 kb on - strand, within CCNA_02067 at 2218.926 kb on + strand, within CCNA_02067 at 2218.939 kb on - strand, within CCNA_02067 at 2219.015 kb on - strand, within CCNA_02067 at 2219.026 kb on - strand, within CCNA_02067 at 2219.062 kb on - strand, within CCNA_02067 at 2219.153 kb on - strand, within CCNA_02067 at 2219.188 kb on + strand, within CCNA_02067 at 2219.241 kb on + strand, within CCNA_02067 at 2219.246 kb on - strand, within CCNA_02067 at 2219.264 kb on - strand, within CCNA_02067 at 2219.311 kb on - strand, within CCNA_02067 at 2219.323 kb on + strand, within CCNA_02067 at 2219.461 kb on - strand at 2219.546 kb on - strand at 2219.593 kb on + strand, within CCNA_02068 at 2219.619 kb on + strand, within CCNA_02068 at 2219.659 kb on + strand, within CCNA_02068 at 2219.659 kb on + strand, within CCNA_02068 at 2219.659 kb on + strand, within CCNA_02068 at 2219.667 kb on - strand, within CCNA_02068 at 2219.667 kb on - strand, within CCNA_02068 at 2219.667 kb on - strand, within CCNA_02068 at 2219.667 kb on - strand, within CCNA_02068 at 2219.667 kb on - strand, within CCNA_02068 at 2219.754 kb on + strand, within CCNA_02068 at 2219.787 kb on + strand, within CCNA_02068 at 2220.821 kb on - strand at 2220.821 kb on - strand at 2220.821 kb on - strand at 2220.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 2,218,726 + +0.5 2,218,771 + +2.7 2,218,771 + -1.2 2,218,779 - +2.3 2,218,807 - +2.2 2,218,825 + +1.4 2,218,858 + -1.1 2,218,863 - +2.7 2,218,866 - +3.7 2,218,904 - CCNA_02067 0.17 +2.9 2,218,904 - CCNA_02067 0.17 +1.5 2,218,904 - CCNA_02067 0.17 +2.1 2,218,904 - CCNA_02067 0.17 +2.3 2,218,904 - CCNA_02067 0.17 +3.0 2,218,910 - CCNA_02067 0.18 +2.1 2,218,926 + CCNA_02067 0.20 -1.1 2,218,939 - CCNA_02067 0.22 +2.3 2,219,015 - CCNA_02067 0.35 +2.0 2,219,026 - CCNA_02067 0.36 +1.3 2,219,062 - CCNA_02067 0.42 +2.6 2,219,153 - CCNA_02067 0.57 +1.9 2,219,188 + CCNA_02067 0.63 +1.1 2,219,241 + CCNA_02067 0.71 -0.7 2,219,246 - CCNA_02067 0.72 +1.3 2,219,264 - CCNA_02067 0.75 +1.4 2,219,311 - CCNA_02067 0.83 +1.4 2,219,323 + CCNA_02067 0.85 -2.3 2,219,461 - +1.8 2,219,546 - +2.8 2,219,593 + CCNA_02068 0.23 -1.6 2,219,619 + CCNA_02068 0.30 +0.7 2,219,659 + CCNA_02068 0.42 -0.5 2,219,659 + CCNA_02068 0.42 +1.4 2,219,659 + CCNA_02068 0.42 -1.1 2,219,667 - CCNA_02068 0.44 +1.9 2,219,667 - CCNA_02068 0.44 +2.5 2,219,667 - CCNA_02068 0.44 +3.1 2,219,667 - CCNA_02068 0.44 +1.9 2,219,667 - CCNA_02068 0.44 +2.6 2,219,754 + CCNA_02068 0.68 -0.4 2,219,787 + CCNA_02068 0.78 +0.1 2,220,821 - -2.4 2,220,821 - -0.9 2,220,821 - +0.4 2,220,823 - -0.7
Or see this region's nucleotide sequence