Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01352

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,463,159	-				+0.4
1,463,322	+		CCNA_01351	0.13	-0.2
1,463,342	+		CCNA_01351	0.16	+0.4
1,463,350	-		CCNA_01351	0.17	+1.1
1,463,372	+		CCNA_01351	0.20	-2.6
1,463,385	+		CCNA_01351	0.22	-1.1
1,463,385	+		CCNA_01351	0.22	-0.4
1,463,385	+		CCNA_01351	0.22	+1.3
1,463,393	-		CCNA_01351	0.23	+0.2
1,463,414	+		CCNA_01351	0.26	+0.8
1,463,422	-		CCNA_01351	0.27	+0.9
1,463,428	-		CCNA_01351	0.27	+2.1
1,463,436	-		CCNA_01351	0.29	+0.7
1,463,472	+		CCNA_01351	0.33	-0.7
1,463,480	-		CCNA_01351	0.35	+0.8
1,463,490	-		CCNA_01351	0.36	+1.5
1,463,592	+		CCNA_01351	0.50	-0.3
1,463,622	-		CCNA_01351	0.54	+1.6
1,463,675	+		CCNA_01351	0.61	-0.1
1,463,675	+		CCNA_01351	0.61	-2.5
1,463,683	-		CCNA_01351	0.62	+1.2
1,463,685	-		CCNA_01351	0.63	+2.3
1,463,687	+		CCNA_01351	0.63	-0.7
1,463,731	+		CCNA_01351	0.69	-0.4
1,463,732	-		CCNA_01351	0.69	+1.9
1,463,737	-		CCNA_01351	0.70	+1.5
1,463,749	+		CCNA_01351	0.71	-1.2
1,463,781	-		CCNA_01351	0.76	+1.5
1,463,811	-		CCNA_01351	0.80	+0.3
1,463,811	-		CCNA_01351	0.80	+1.0
1,463,811	-		CCNA_01351	0.80	+1.0
1,463,842	+		CCNA_01351	0.84	-2.0
1,463,850	-		CCNA_01351	0.85	+1.0
1,463,850	-		CCNA_01351	0.85	-0.6
1,463,850	-		CCNA_01351	0.85	-0.2
1,463,878	+		CCNA_01351	0.89	+1.8
1,463,878	+		CCNA_01351	0.89	-1.2
1,463,885	-				-0.1
1,463,996	-				+0.9
1,463,998	+				-0.3
1,464,006	-				+1.1
1,464,009	+				+0.0
1,464,016	+				+0.4
1,464,040	+				-0.6
1,464,040	+				-1.3
1,464,040	+				+1.5
1,464,048	-				+1.3
1,464,048	-				+2.0
1,464,061	-				+0.6
1,464,066	+				-0.7
1,464,078	+				+0.1
1,464,086	-				+2.7
1,464,086	-				+0.8
1,464,088	+				-0.5
1,464,088	+				+0.8
1,464,088	+				-1.1
1,464,088	+				+0.9
1,464,088	+				-0.1
1,464,088	+				+0.3
1,464,096	-				+0.7
1,464,096	-				+1.3
1,464,096	-				+1.9
1,464,096	-				+0.1
1,464,097	-				+0.7
1,464,102	-				+1.5
1,464,107	+				-2.5
1,464,119	-				+0.9
1,464,137	-		CCNA_01352	0.11	+1.5
1,464,144	+		CCNA_01352	0.11	-0.7
1,464,282	+		CCNA_01352	0.20	-2.7
1,464,290	-		CCNA_01352	0.20	+1.4
1,464,290	-		CCNA_01352	0.20	+2.3
1,464,347	+		CCNA_01352	0.24	-0.7
1,464,355	-		CCNA_01352	0.24	+1.8
1,464,360	-		CCNA_01352	0.25	+1.8
1,464,368	+		CCNA_01352	0.25	-0.7
1,464,376	-		CCNA_01352	0.26	+1.9
1,464,416	-		CCNA_01352	0.28	+1.0
1,464,438	-		CCNA_01352	0.29	+1.3
1,464,451	+		CCNA_01352	0.30	+0.4
1,464,451	+		CCNA_01352	0.30	-0.6
1,464,451	+		CCNA_01352	0.30	-2.0
1,464,451	+		CCNA_01352	0.30	-1.3
1,464,451	+		CCNA_01352	0.30	-0.1
1,464,456	+		CCNA_01352	0.31	-0.6
1,464,459	-		CCNA_01352	0.31	+1.7
1,464,459	-		CCNA_01352	0.31	+2.2
1,464,464	-		CCNA_01352	0.31	+0.3
1,464,474	-		CCNA_01352	0.32	+1.3
1,464,474	-		CCNA_01352	0.32	+1.1
1,464,523	-		CCNA_01352	0.35	+0.3
1,464,523	-		CCNA_01352	0.35	+0.6
1,464,540	-		CCNA_01352	0.36	+3.0
1,464,579	-		CCNA_01352	0.38	+1.0
1,464,594	-		CCNA_01352	0.39	+0.6
1,464,594	-		CCNA_01352	0.39	+0.3
1,464,594	-		CCNA_01352	0.39	+0.1
1,464,631	+		CCNA_01352	0.41	+0.2
1,464,639	-		CCNA_01352	0.42	-1.6
1,464,639	-		CCNA_01352	0.42	+2.3
1,464,675	+		CCNA_01352	0.44	+0.4
1,464,726	+		CCNA_01352	0.47	-1.0
1,464,733	-		CCNA_01352	0.48	+1.1
1,464,741	-		CCNA_01352	0.48	+0.2
1,464,804	-		CCNA_01352	0.52	+1.6
1,464,807	+		CCNA_01352	0.52	+0.3
1,464,815	-		CCNA_01352	0.53	+2.9
1,464,853	+		CCNA_01352	0.55	+1.7
1,464,861	-		CCNA_01352	0.55	+0.2
1,464,861	-		CCNA_01352	0.55	+2.6
1,464,863	+		CCNA_01352	0.56	-0.2
1,464,863	+		CCNA_01352	0.56	-0.1
1,464,875	+		CCNA_01352	0.56	-1.2
1,464,877	+		CCNA_01352	0.56	-0.7
1,464,887	+		CCNA_01352	0.57	-1.4
1,464,955	+		CCNA_01352	0.61	+0.4
1,464,963	-		CCNA_01352	0.62	+1.7
1,464,963	-		CCNA_01352	0.62	+1.3
1,464,980	+		CCNA_01352	0.63	-0.4
1,464,980	+		CCNA_01352	0.63	-3.4
1,464,980	+		CCNA_01352	0.63	-1.5
1,464,988	-		CCNA_01352	0.63	+2.3
1,464,997	+		CCNA_01352	0.64	-0.5
1,465,010	-		CCNA_01352	0.65	+1.0
1,465,058	-		CCNA_01352	0.67	+0.9
1,465,130	-		CCNA_01352	0.72	+3.1
1,465,139	+		CCNA_01352	0.72	-1.7
1,465,139	+		CCNA_01352	0.72	+0.3
1,465,147	-		CCNA_01352	0.73	+1.7
1,465,147	-		CCNA_01352	0.73	+2.9
1,465,182	+		CCNA_01352	0.75	-3.1
1,465,228	+		CCNA_01352	0.78	+0.9
1,465,254	-		CCNA_01352	0.79	+1.0
1,465,292	+		CCNA_01352	0.82	-1.1
1,465,325	-		CCNA_01352	0.84	+1.3
1,465,341	+		CCNA_01352	0.85	+0.8
1,465,341	+		CCNA_01352	0.85	-0.4
1,465,349	-		CCNA_01352	0.85	+1.2
1,465,349	-		CCNA_01352	0.85	+1.2
1,465,349	-		CCNA_01352	0.85	+1.6
1,465,370	-		CCNA_01352	0.87	+0.6
1,465,438	-				+0.6
1,465,511	+				-0.2
1,465,518	-				-0.1
1,465,577	-				+0.3
1,465,604	+				-1.6
1,465,612	-				+0.3
1,465,622	+				+0.2
1,465,652	+				-2.3
1,465,691	+				+0.7
1,465,691	+				-0.7
1,465,699	-				+1.0
1,465,721	+				-3.0
1,465,737	+				-0.6
1,465,737	+				+0.9
1,465,739	+				-1.7
1,465,739	+				-1.1
1,465,739	+				+2.3
1,465,739	+				-0.8
1,465,739	+				-1.3
1,465,747	-				+0.9
1,465,747	-				+0.6
1,465,747	-				+0.1
1,465,757	+				-0.7
1,465,801	-				-1.1
1,465,801	-				-1.9
1,465,823	-				-0.7
1,465,834	+				-2.0
1,465,879	+				-2.1
1,465,879	+				-0.9
1,465,887	-				+1.0
1,465,887	-				+0.4
1,465,887	-				-1.4
1,465,887	-				-1.0
1,465,889	+				+0.1
1,465,889	+				-0.8
1,465,889	+				-0.1
1,465,912	-				+0.2
1,465,961	+				-1.3
1,465,961	+				+0.7
1,465,961	+				-0.1
1,465,969	-				-0.4
1,465,969	-				-0.2
1,465,969	-				-2.7
1,466,001	-				+0.3
1,466,001	-				+1.1
1,466,050	+				-1.1
1,466,065	+		CCNA_01353	0.10	-1.3
1,466,072	-		CCNA_01353	0.11	-0.4
1,466,080	-		CCNA_01353	0.11	+2.3
1,466,097	+		CCNA_01353	0.12	-0.8
1,466,103	-		CCNA_01353	0.12	-2.8
1,466,106	+		CCNA_01353	0.12	-0.7
1,466,116	+		CCNA_01353	0.13	-1.1
1,466,124	-		CCNA_01353	0.13	+0.3
1,466,124	-		CCNA_01353	0.13	-0.6
1,466,152	+		CCNA_01353	0.15	+0.3
1,466,188	+		CCNA_01353	0.17	+2.5
1,466,188	+		CCNA_01353	0.17	+1.7
1,466,196	-		CCNA_01353	0.17	-1.9
1,466,237	-		CCNA_01353	0.19	-1.9
1,466,247	+		CCNA_01353	0.19	+0.1
1,466,261	-		CCNA_01353	0.20	-2.6
1,466,280	+		CCNA_01353	0.21	+0.1
1,466,288	-		CCNA_01353	0.21	-1.4
1,466,339	-		CCNA_01353	0.24	+0.2
1,466,355	+		CCNA_01353	0.25	-2.1
1,466,356	+		CCNA_01353	0.25	+0.8
1,466,361	+		CCNA_01353	0.25	+2.3
1,466,361	+		CCNA_01353	0.25	-1.9
1,466,363	-		CCNA_01353	0.25	-0.7
1,466,364	-		CCNA_01353	0.25	+3.3
1,466,368	+		CCNA_01353	0.25	-0.3
1,466,378	+		CCNA_01353	0.26	-2.0
1,466,399	-		CCNA_01353	0.27	+1.7
1,466,399	-		CCNA_01353	0.27	-1.3
1,466,405	+		CCNA_01353	0.27	-1.3
1,466,470	+		CCNA_01353	0.30	+0.4
1,466,470	+		CCNA_01353	0.30	-3.0
1,466,472	+		CCNA_01353	0.31	-0.1
1,466,478	-		CCNA_01353	0.31	-0.8
1,466,479	+		CCNA_01353	0.31	+0.4
1,466,480	-		CCNA_01353	0.31	-1.0
1,466,480	-		CCNA_01353	0.31	-1.4
1,466,487	-		CCNA_01353	0.31	+0.9
1,466,497	+		CCNA_01353	0.32	-0.8
1,466,497	+		CCNA_01353	0.32	-1.5
1,466,503	-		CCNA_01353	0.32	-0.3
1,466,503	-		CCNA_01353	0.32	+0.3
1,466,505	-		CCNA_01353	0.32	-0.4
1,466,519	+		CCNA_01353	0.33	-1.5
1,466,544	+		CCNA_01353	0.34	+0.2
1,466,544	+		CCNA_01353	0.34	-1.7