Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01337

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,449,138	+		CCNA_01336	0.27	+0.3
1,449,171	-		CCNA_01336	0.29	-0.4
1,449,191	-		CCNA_01336	0.31	+0.4
1,449,191	-		CCNA_01336	0.31	-0.9
1,449,217	+		CCNA_01336	0.33	-0.7
1,449,217	+		CCNA_01336	0.33	-0.2
1,449,251	+		CCNA_01336	0.36	-0.6
1,449,281	-		CCNA_01336	0.38	+0.2
1,449,286	-		CCNA_01336	0.39	-1.2
1,449,291	-		CCNA_01336	0.39	+1.1
1,449,291	-		CCNA_01336	0.39	+0.7
1,449,291	-		CCNA_01336	0.39	+0.2
1,449,314	+		CCNA_01336	0.41	-0.6
1,449,322	-		CCNA_01336	0.42	-1.1
1,449,322	-		CCNA_01336	0.42	-1.8
1,449,324	+		CCNA_01336	0.42	-2.0
1,449,336	-		CCNA_01336	0.43	+0.2
1,449,385	+		CCNA_01336	0.47	+0.2
1,449,385	+		CCNA_01336	0.47	+0.9
1,449,391	+		CCNA_01336	0.47	-0.5
1,449,414	+		CCNA_01336	0.49	+0.7
1,449,414	+		CCNA_01336	0.49	+1.1
1,449,422	-		CCNA_01336	0.50	-0.7
1,449,455	-		CCNA_01336	0.52	-1.2
1,449,489	+		CCNA_01336	0.55	-1.5
1,449,490	-				+3.2
1,449,493	+		CCNA_01336	0.56	+0.3
1,449,563	+		CCNA_01336	0.61	-1.6
1,449,563	+		CCNA_01336	0.61	+1.8
1,449,563	+		CCNA_01336	0.61	-1.1
1,449,571	-		CCNA_01336	0.62	-2.2
1,449,582	-		CCNA_01336	0.63	-1.8
1,449,636	+		CCNA_01336	0.67	+1.8
1,449,673	+		CCNA_01336	0.70	-1.0
1,449,681	-		CCNA_01336	0.71	-0.3
1,449,689	+		CCNA_01336	0.71	-1.4
1,449,771	-		CCNA_01336	0.78	+0.4
1,449,855	+		CCNA_01336	0.85	-0.8
1,449,863	-		CCNA_01336	0.86	-0.5
1,449,863	-		CCNA_01336	0.86	-0.4
1,449,872	-		CCNA_01336	0.86	-0.7
1,449,935	+				-0.7
1,449,935	+				+1.0
1,449,945	+				-0.3
1,449,947	+				+1.2
1,449,953	-				+2.4
1,449,967	+				-1.2
1,449,970	-				+0.8
1,449,973	+				+0.0
1,450,017	-				-3.8
1,450,017	-				-1.0
1,450,083	+				-1.1
1,450,101	+				-0.6
1,450,101	+				-0.3
1,450,191	-				-2.6
1,450,222	+				+1.7
1,450,257	+				-1.0
1,450,257	+				+4.0
1,450,316	+		CCNA_01337	0.13	+0.4
1,450,337	+		CCNA_01337	0.14	+0.7
1,450,345	-		CCNA_01337	0.15	-1.2
1,450,345	-		CCNA_01337	0.15	-0.2
1,450,351	+		CCNA_01337	0.15	-0.1
1,450,352	+		CCNA_01337	0.15	-2.4
1,450,352	+		CCNA_01337	0.15	+1.6
1,450,352	+		CCNA_01337	0.15	-1.7
1,450,360	-		CCNA_01337	0.15	-0.7
1,450,581	+		CCNA_01337	0.29	-1.3
1,450,626	+		CCNA_01337	0.32	-0.8
1,450,629	-		CCNA_01337	0.32	+0.0
1,450,629	-		CCNA_01337	0.32	+0.2
1,450,629	-		CCNA_01337	0.32	-1.0
1,450,629	-		CCNA_01337	0.32	-1.5
1,450,671	+		CCNA_01337	0.35	-2.8
1,450,686	-		CCNA_01337	0.36	+0.1
1,450,734	+		CCNA_01337	0.39	+0.6
1,450,749	+		CCNA_01337	0.39	+1.1
1,450,757	-		CCNA_01337	0.40	+0.9
1,450,818	-		CCNA_01337	0.44	-0.4
1,450,829	+		CCNA_01337	0.44	-0.3
1,450,839	+				+1.2
1,450,902	+		CCNA_01337	0.49	+1.0
1,450,918	-		CCNA_01337	0.50	+0.2
1,450,943	-		CCNA_01337	0.51	-1.0
1,450,975	-		CCNA_01337	0.53	-0.9
1,450,986	-		CCNA_01337	0.54	-0.7
1,451,014	+		CCNA_01337	0.56	+2.1
1,451,032	+		CCNA_01337	0.57	-2.1
1,451,034	-		CCNA_01337	0.57	+0.2
1,451,040	+		CCNA_01337	0.57	-1.1
1,451,087	+		CCNA_01337	0.60	-0.7
1,451,087	+		CCNA_01337	0.60	-0.5
1,451,087	+		CCNA_01337	0.60	-0.2
1,451,087	+		CCNA_01337	0.60	-0.9
1,451,087	+		CCNA_01337	0.60	-1.3
1,451,087	+		CCNA_01337	0.60	-1.1
1,451,095	-		CCNA_01337	0.61	-0.8
1,451,095	-		CCNA_01337	0.61	+1.9
1,451,098	+		CCNA_01337	0.61	-0.6
1,451,098	+		CCNA_01337	0.61	+1.9
1,451,101	-		CCNA_01337	0.61	-2.4
1,451,174	+		CCNA_01337	0.66	+0.5
1,451,174	+		CCNA_01337	0.66	+0.6
1,451,174	+		CCNA_01337	0.66	+1.3
1,451,182	-		CCNA_01337	0.66	-1.5
1,451,225	-		CCNA_01337	0.69	-1.7
1,451,237	+		CCNA_01337	0.70	-0.2
1,451,247	+		CCNA_01337	0.70	+0.2
1,451,247	+		CCNA_01337	0.70	-0.0
1,451,270	+		CCNA_01337	0.72	+0.0
1,451,270	+		CCNA_01337	0.72	+0.6
1,451,278	-		CCNA_01337	0.72	-0.5
1,451,298	-		CCNA_01337	0.73	-1.3
1,451,303	+		CCNA_01337	0.74	-0.4
1,451,305	+		CCNA_01337	0.74	+0.0
1,451,311	-		CCNA_01337	0.74	-2.1
1,451,349	-		CCNA_01337	0.76	-0.5
1,451,374	-		CCNA_01337	0.78	-1.2
1,451,392	+		CCNA_01337	0.79	-0.2
1,451,392	-		CCNA_01337	0.79	-2.0
1,451,466	+		CCNA_01337	0.84	+0.4
1,451,474	-		CCNA_01337	0.84	-2.9
1,451,474	-		CCNA_01337	0.84	-0.4
1,451,474	-		CCNA_01337	0.84	+0.4
1,451,489	+		CCNA_01337	0.85	-1.0
1,451,534	-		CCNA_01337	0.88	-1.8
1,451,555	+		CCNA_01337	0.89	+1.6
1,451,586	+				-1.8
1,451,616	+				-0.8
1,451,681	+				-1.4
1,451,835	+				+0.9
1,451,837	-				-0.5
1,451,856	+		CCNA_01338	0.12	+1.5
1,451,856	+		CCNA_01338	0.12	+0.9
1,451,869	-		CCNA_01338	0.15	+0.7
1,451,874	-		CCNA_01338	0.16	+0.4
1,451,937	+		CCNA_01338	0.30	+0.9
1,451,945	+		CCNA_01338	0.31	+2.2
1,451,978	+		CCNA_01338	0.39	+1.7
1,451,983	+		CCNA_01338	0.40	+2.5
1,451,983	+		CCNA_01338	0.40	+2.5
1,451,986	-		CCNA_01338	0.40	-0.6
1,451,988	+		CCNA_01338	0.41	+3.0
1,451,991	-		CCNA_01338	0.41	+3.2
1,452,117	+		CCNA_01338	0.69	+2.8
1,452,120	+		CCNA_01338	0.70	+2.8
1,452,122	+		CCNA_01338	0.70	-1.8
1,452,137	+		CCNA_01338	0.73	+1.6
1,452,139	+		CCNA_01338	0.74	+1.7
1,452,167	+		CCNA_01338	0.80	+0.6
1,452,167	+		CCNA_01338	0.80	+1.9
1,452,167	+		CCNA_01338	0.80	+2.8
1,452,167	+		CCNA_01338	0.80	+1.9
1,452,167	+		CCNA_01338	0.80	+3.7
1,452,167	+		CCNA_01338	0.80	+0.8
1,452,175	-		CCNA_01338	0.82	+0.6
1,452,177	+		CCNA_01338	0.82	+3.4
1,452,196	-		CCNA_01338	0.86	-1.6
1,452,254	-				-1.6
1,452,263	+				+3.9
1,452,263	+				+3.3
1,452,263	+				+3.2
1,452,271	-				-0.4
1,452,271	-				-0.3
1,452,284	+				+2.5
1,452,368	+		CCNA_01339	0.35	+2.8
1,452,368	+		CCNA_01339	0.35	+3.2
1,452,390	+		CCNA_01339	0.41	+2.3
1,452,405	+		CCNA_01339	0.46	+2.6
1,452,424	+		CCNA_01339	0.52	+3.0
1,452,425	+		CCNA_01339	0.52	+3.0
1,452,428	+		CCNA_01339	0.53	+1.2
1,452,433	+		CCNA_01339	0.54	+2.9
1,452,446	+		CCNA_01339	0.58	+2.2
1,452,471	-		CCNA_01339	0.66	-1.3
1,452,496	+		CCNA_01339	0.73	+3.5
1,452,504	-				+0.2
1,452,508	+		CCNA_01339	0.77	-0.3
1,452,516	-		CCNA_01339	0.79	-2.2
1,452,526	+		CCNA_01339	0.82	+0.7
1,452,541	+		CCNA_01339	0.87	+0.8
1,452,541	+		CCNA_01339	0.87	+1.5
1,452,549	-		CCNA_01339	0.89	-2.0
1,452,568	+				+1.4
1,452,576	-				-0.6
1,452,593	-				-0.7
1,452,628	+				-1.0
1,452,628	+				-0.7
1,452,636	-		CCNA_03880	0.11	-0.1
1,452,697	-		CCNA_03880	0.24	-1.2
1,452,719	+		CCNA_03880	0.28	-0.5