Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01183

Experiment: a-Cyclodextrin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin (C)
1,301,616	+		CCNA_01181	0.64	+1.2
1,301,643	-		CCNA_01181	0.70	-1.2
1,301,658	-		CCNA_01181	0.72	+2.0
1,301,740	+		CCNA_01181	0.88	-0.5
1,301,838	+				-0.4
1,301,838	+				-1.7
1,301,838	+				-2.2
1,301,838	+				-2.1
1,301,846	-				+2.9
1,301,846	-				+2.6
1,301,859	+				-0.5
1,301,893	+				+1.4
1,301,893	+				+1.8
1,301,906	-				-1.8
1,301,989	-				-1.6
1,301,990	+				+1.8
1,301,990	+				+1.3
1,301,990	+				+1.6
1,301,995	+				+1.1
1,302,077	+		CCNA_01182	0.14	-1.0
1,302,082	+		CCNA_01182	0.15	-0.0
1,302,136	-		CCNA_01182	0.24	-0.6
1,302,137	+		CCNA_01182	0.24	+0.4
1,302,137	+		CCNA_01182	0.24	-0.7
1,302,137	+		CCNA_01182	0.24	-0.3
1,302,138	-		CCNA_01182	0.24	+0.3
1,302,139	+		CCNA_01182	0.25	-1.1
1,302,145	-		CCNA_01182	0.26	+0.3
1,302,145	-		CCNA_01182	0.26	+0.1
1,302,145	-		CCNA_01182	0.26	-3.0
1,302,145	-		CCNA_01182	0.26	-0.6
1,302,145	-		CCNA_01182	0.26	-0.1
1,302,145	-		CCNA_01182	0.26	-2.1
1,302,145	-		CCNA_01182	0.26	-1.2
1,302,160	-		CCNA_01182	0.28	-1.8
1,302,180	-		CCNA_01182	0.31	+0.5
1,302,202	-		CCNA_01182	0.35	-2.2
1,302,231	+		CCNA_01182	0.40	-1.1
1,302,231	+		CCNA_01182	0.40	-1.2
1,302,231	+		CCNA_01182	0.40	+1.4
1,302,239	-		CCNA_01182	0.41	+2.1
1,302,244	-		CCNA_01182	0.42	-1.3
1,302,254	+		CCNA_01182	0.44	-1.3
1,302,262	-		CCNA_01182	0.45	-0.9
1,302,296	+		CCNA_01182	0.51	-1.8
1,302,296	-		CCNA_01182	0.51	-0.1
1,302,298	+		CCNA_01182	0.51	-1.2
1,302,298	+		CCNA_01182	0.51	-2.8
1,302,305	+		CCNA_01182	0.53	+0.2
1,302,306	-		CCNA_01182	0.53	-3.4
1,302,310	+		CCNA_01182	0.53	-2.7
1,302,340	+		CCNA_01182	0.58	-0.6
1,302,346	-		CCNA_01182	0.59	-1.3
1,302,346	-		CCNA_01182	0.59	-1.9
1,302,347	-		CCNA_01182	0.60	+1.1
1,302,366	+		CCNA_01182	0.63	-0.6
1,302,366	+		CCNA_01182	0.63	+0.4
1,302,374	-		CCNA_01182	0.64	+0.5
1,302,374	-		CCNA_01182	0.64	-1.5
1,302,374	-		CCNA_01182	0.64	-1.6
1,302,374	-		CCNA_01182	0.64	-1.0
1,302,412	+		CCNA_01182	0.71	+2.4
1,302,412	+		CCNA_01182	0.71	-1.7
1,302,412	+		CCNA_01182	0.71	-0.2
1,302,417	+		CCNA_01182	0.71	-1.5
1,302,420	-		CCNA_01182	0.72	+0.2
1,302,422	-		CCNA_01182	0.72	-1.5
1,302,432	-		CCNA_01182	0.74	-1.1
1,302,458	-		CCNA_01182	0.78	-1.5
1,302,485	+		CCNA_01182	0.83	+1.2
1,302,485	+		CCNA_01182	0.83	-0.3
1,302,485	+		CCNA_01182	0.83	+1.0
1,302,485	+		CCNA_01182	0.83	+1.2
1,302,485	+		CCNA_01182	0.83	+0.7
1,302,485	+		CCNA_01182	0.83	+1.3
1,302,485	+		CCNA_01182	0.83	-0.3
1,302,487	-		CCNA_01182	0.83	-0.8
1,302,493	-		CCNA_01182	0.84	-0.1
1,302,493	-		CCNA_01182	0.84	-1.9
1,302,493	-		CCNA_01182	0.84	-2.7
1,302,493	-		CCNA_01182	0.84	+1.1
1,302,493	-		CCNA_01182	0.84	+0.4
1,302,493	-		CCNA_01182	0.84	-0.8
1,302,493	-		CCNA_01182	0.84	-1.1
1,302,493	-		CCNA_01182	0.84	-1.1
1,302,493	-		CCNA_01182	0.84	-1.1
1,302,511	-		CCNA_01182	0.87	+0.3
1,302,521	+		CCNA_01182	0.89	-1.0
1,302,537	-				-0.2
1,302,550	+				+0.5
1,302,567	-				-1.0
1,302,602	-				-1.3
1,302,656	-				+0.5
1,302,676	+				+0.8
1,302,676	+				+2.6
1,302,684	-				-1.6
1,302,684	-				+0.7
1,302,684	-				+3.1
1,302,684	-				+0.9
1,302,686	-				-0.4
1,302,687	+				+1.6
1,302,704	-				-0.6
1,302,740	-		CCNA_01183	0.13	-0.6
1,302,759	+		CCNA_01183	0.15	+1.4
1,302,815	+		CCNA_01183	0.20	+1.3
1,302,816	+		CCNA_01183	0.21	+0.5
1,302,839	+		CCNA_01183	0.23	+1.8
1,302,839	+		CCNA_01183	0.23	+0.3
1,302,872	+		CCNA_01183	0.26	+0.9
1,302,907	-		CCNA_01183	0.29	-0.3
1,302,935	+		CCNA_01183	0.32	+1.7
1,302,935	+		CCNA_01183	0.32	+0.2
1,302,935	+		CCNA_01183	0.32	+1.7
1,302,935	+		CCNA_01183	0.32	+0.9
1,302,935	+		CCNA_01183	0.32	+1.9
1,302,937	+		CCNA_01183	0.32	+1.0
1,302,937	+		CCNA_01183	0.32	+2.0
1,302,937	+		CCNA_01183	0.32	+3.0
1,302,939	+		CCNA_01183	0.32	+0.5
1,302,943	-		CCNA_01183	0.33	-0.6
1,302,945	-		CCNA_01183	0.33	-0.5
1,302,945	-		CCNA_01183	0.33	+0.4
1,302,972	+		CCNA_01183	0.36	+2.5
1,302,980	-		CCNA_01183	0.36	-2.0
1,302,980	-		CCNA_01183	0.36	-3.1
1,302,980	-		CCNA_01183	0.36	-0.5
1,303,014	+		CCNA_01183	0.40	+1.0
1,303,025	+		CCNA_01183	0.41	+0.5
1,303,063	+		CCNA_01183	0.45	+0.8
1,303,083	+		CCNA_01183	0.46	+1.1
1,303,099	+		CCNA_01183	0.48	+0.6
1,303,107	-		CCNA_01183	0.49	-2.7
1,303,107	-		CCNA_01183	0.49	-1.1
1,303,107	-		CCNA_01183	0.49	-0.5
1,303,110	+		CCNA_01183	0.49	+1.4
1,303,117	-		CCNA_01183	0.50	+1.1
1,303,127	-		CCNA_01183	0.51	-0.3
1,303,127	-		CCNA_01183	0.51	+0.0
1,303,138	+		CCNA_01183	0.52	+0.6
1,303,189	+		CCNA_01183	0.57	+0.5
1,303,204	+		CCNA_01183	0.58	+0.9
1,303,207	-		CCNA_01183	0.59	+0.9
1,303,237	+		CCNA_01183	0.61	+0.5
1,303,237	+		CCNA_01183	0.61	+1.5
1,303,270	+		CCNA_01183	0.65	+1.7
1,303,278	-		CCNA_01183	0.65	-0.2
1,303,278	-		CCNA_01183	0.65	-1.5
1,303,278	-		CCNA_01183	0.65	-0.1
1,303,280	+		CCNA_01183	0.66	+1.8
1,303,280	+		CCNA_01183	0.66	+1.9
1,303,332	+		CCNA_01183	0.71	+1.4
1,303,347	-		CCNA_01183	0.72	-0.1
1,303,355	+		CCNA_01183	0.73	+1.9
1,303,355	+		CCNA_01183	0.73	+2.1
1,303,355	+				+4.1
1,303,370	+		CCNA_01183	0.74	+2.6
1,303,464	+		CCNA_01183	0.83	+2.3
1,303,464	-				+0.5
1,303,469	+		CCNA_01183	0.84	+1.6
1,303,469	+		CCNA_01183	0.84	+2.0
1,303,472	-		CCNA_01183	0.84	+1.4
1,303,482	-		CCNA_01183	0.85	-0.1
1,303,567	+				+2.7
1,303,580	+				+2.9
1,303,663	+				+2.3
1,303,681	-				+0.3
1,303,707	+		CCNA_01184	0.15	+2.1
1,303,707	+		CCNA_01184	0.15	+2.2
1,303,707	+		CCNA_01184	0.15	+2.5
1,303,707	+				+3.7
1,303,707	+		CCNA_01184	0.15	+2.9
1,303,707	+		CCNA_01184	0.15	+2.4
1,303,715	-		CCNA_01184	0.17	+2.1
1,303,717	+		CCNA_01184	0.17	+2.5
1,303,722	+		CCNA_01184	0.18	+1.9
1,303,725	-		CCNA_01184	0.19	-1.6
1,303,731	+		CCNA_01184	0.20	+2.1
1,303,732	+		CCNA_01184	0.20	+1.5
1,303,754	+		CCNA_01184	0.25	+1.4
1,303,759	-				+0.1
1,303,767	-		CCNA_01184	0.28	+0.4
1,303,768	+		CCNA_01184	0.28	+1.6
1,303,776	-		CCNA_01184	0.30	+1.1
1,303,882	-		CCNA_01184	0.54	-0.1
1,303,885	+		CCNA_01184	0.55	+1.4
1,303,896	+		CCNA_01184	0.57	+1.3
1,303,954	+		CCNA_01184	0.70	+0.7
1,303,960	-		CCNA_01184	0.71	-2.1
1,303,962	-		CCNA_01184	0.72	-1.0
1,303,973	+		CCNA_01184	0.74	+2.7
1,303,973	+		CCNA_01184	0.74	+0.3
1,303,981	-				+0.8
1,303,988	-		CCNA_01184	0.78	-0.7
1,304,000	+		CCNA_01184	0.80	+1.9
1,304,000	+		CCNA_01184	0.80	+1.7
1,304,005	+		CCNA_01184	0.81	+1.7
1,304,005	+		CCNA_01184	0.81	+1.1
1,304,008	-		CCNA_01184	0.82	-0.6
1,304,013	-		CCNA_01184	0.83	+0.5
1,304,013	-		CCNA_01184	0.83	+0.7
1,304,013	-		CCNA_01184	0.83	-1.2
1,304,026	+		CCNA_01184	0.86	+1.6
1,304,036	+		CCNA_01184	0.88	+1.1
1,304,036	+		CCNA_01184	0.88	+1.5
1,304,046	+				+1.0
1,304,059	-				-2.1
1,304,080	-				-0.9
1,304,082	+				-0.1
1,304,136	+		CCNA_01185	0.12	+1.5
1,304,145	-		CCNA_01185	0.15	-1.7
1,304,148	+		CCNA_01185	0.16	+1.0
1,304,171	+		CCNA_01185	0.22	+0.8
1,304,171	+		CCNA_01185	0.22	+0.4
1,304,202	-		CCNA_01185	0.31	+2.1
1,304,212	-		CCNA_01185	0.34	-1.4
1,304,229	+		CCNA_01185	0.39	-1.6
1,304,229	+		CCNA_01185	0.39	+2.7
1,304,237	-		CCNA_01185	0.41	-1.8
1,304,237	-		CCNA_01185	0.41	-1.3
1,304,237	-		CCNA_01185	0.41	-2.1
1,304,280	-		CCNA_01185	0.53	-1.1
1,304,296	+		CCNA_01185	0.58	+0.8
1,304,319	+		CCNA_01185	0.64	-0.1
1,304,319	+		CCNA_01185	0.64	+2.0
1,304,327	-		CCNA_01185	0.67	+0.2
1,304,399	+		CCNA_01185	0.87	-1.2
1,304,399	+		CCNA_01185	0.87	-1.8
1,304,404	+		CCNA_01185	0.89	+0.8
1,304,407	-		CCNA_01185	0.89	-0.5
1,304,444	+				-0.3
1,304,452	-				-0.7
1,304,492	-				+0.2
1,304,585	+				-1.8