Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00833 and CCNA_03942 are separated by 136 nucleotides CCNA_03942 and CCNA_00834 are separated by 171 nucleotides CCNA_00834 and CCNA_00835 are separated by 550 nucleotides
CCNA_00833: CCNA_00833 - NAD(P)H:quinone oxidoreductase, at 898,620 to 899,219
_00833
CCNA_03942: CCNA_03942 - hypothetical protein, at 899,356 to 899,490
_03942
CCNA_00834: CCNA_00834 - flagellin FljM, at 899,662 to 900,483
_00834
CCNA_00835: CCNA_00835 - flagellin FljN, at 901,034 to 901,855
_00835
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 898.668 kb on - strand at 898.668 kb on - strand at 898.668 kb on - strand at 898.669 kb on - strand at 898.669 kb on - strand at 898.682 kb on - strand, within CCNA_00833 at 898.721 kb on + strand, within CCNA_00833 at 898.733 kb on + strand, within CCNA_00833 at 898.742 kb on - strand, within CCNA_00833 at 898.742 kb on - strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.772 kb on + strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.780 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.814 kb on - strand, within CCNA_00833 at 898.906 kb on + strand, within CCNA_00833 at 898.941 kb on - strand, within CCNA_00833 at 898.963 kb on + strand, within CCNA_00833 at 898.971 kb on - strand, within CCNA_00833 at 898.994 kb on + strand, within CCNA_00833 at 899.061 kb on + strand, within CCNA_00833 at 899.079 kb on - strand, within CCNA_00833 at 899.139 kb on - strand, within CCNA_00833 at 899.144 kb on - strand, within CCNA_00833 at 899.213 kb on - strand at 899.216 kb on - strand at 899.262 kb on - strand at 899.361 kb on - strand at 899.361 kb on - strand at 899.376 kb on - strand, within CCNA_03942 at 899.392 kb on - strand, within CCNA_03942 at 899.420 kb on + strand, within CCNA_03942 at 899.428 kb on - strand, within CCNA_03942 at 899.629 kb on + strand at 899.639 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.665 kb on + strand at 899.673 kb on - strand at 899.673 kb on - strand at 899.673 kb on - strand at 899.675 kb on + strand at 899.678 kb on - strand at 899.683 kb on - strand at 899.737 kb on - strand at 899.752 kb on - strand, within CCNA_00834 at 899.755 kb on + strand, within CCNA_00834 at 899.978 kb on + strand, within CCNA_00834 at 899.988 kb on + strand, within CCNA_00834 at 900.007 kb on + strand, within CCNA_00834 at 900.059 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.065 kb on - strand, within CCNA_00834 at 900.089 kb on + strand, within CCNA_00834 at 900.089 kb on + strand, within CCNA_00834 at 900.127 kb on + strand, within CCNA_00834 at 900.147 kb on + strand, within CCNA_00834 at 900.148 kb on + strand, within CCNA_00834 at 900.150 kb on - strand, within CCNA_00834 at 900.155 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.156 kb on - strand, within CCNA_00834 at 900.236 kb on - strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.322 kb on + strand, within CCNA_00834 at 900.332 kb on + strand, within CCNA_00834 at 900.332 kb on + strand, within CCNA_00834 at 900.568 kb on - strand at 900.587 kb on - strand at 900.599 kb on - strand at 900.605 kb on - strand at 900.615 kb on + strand at 900.623 kb on - strand at 900.625 kb on - strand at 900.648 kb on - strand at 900.664 kb on + strand at 900.682 kb on + strand at 900.682 kb on + strand at 900.682 kb on + strand at 900.682 kb on + strand at 900.687 kb on + strand at 900.687 kb on + strand at 900.688 kb on + strand at 900.690 kb on - strand at 900.690 kb on - strand at 900.690 kb on - strand at 900.695 kb on - strand at 900.695 kb on - strand at 900.695 kb on - strand at 900.704 kb on + strand at 900.733 kb on + strand at 900.751 kb on - strand at 900.762 kb on + strand at 900.770 kb on - strand at 900.785 kb on - strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.790 kb on + strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.798 kb on - strand at 900.811 kb on + strand at 900.819 kb on - strand at 900.851 kb on - strand at 900.990 kb on - strand at 901.012 kb on + strand at 901.012 kb on + strand at 901.013 kb on + strand at 901.020 kb on - strand at 901.020 kb on - strand at 901.037 kb on + strand at 901.045 kb on - strand at 901.045 kb on - strand at 901.045 kb on - strand at 901.109 kb on - strand at 901.114 kb on - strand at 901.124 kb on - strand, within CCNA_00835 at 901.124 kb on - strand, within CCNA_00835 at 901.162 kb on + strand, within CCNA_00835 at 901.162 kb on + strand, within CCNA_00835 at 901.162 kb on + strand, within CCNA_00835 at 901.360 kb on + strand, within CCNA_00835 at 901.360 kb on + strand, within CCNA_00835 at 901.405 kb on + strand, within CCNA_00835 at 901.410 kb on - strand, within CCNA_00835 at 901.424 kb on + strand, within CCNA_00835 at 901.461 kb on + strand, within CCNA_00835
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 898,668 - -0.9 898,668 - +0.0 898,668 - +0.6 898,669 - -1.4 898,669 - -2.0 898,682 - CCNA_00833 0.10 -1.2 898,721 + CCNA_00833 0.17 +1.2 898,733 + CCNA_00833 0.19 -0.7 898,742 - CCNA_00833 0.20 -1.6 898,742 - CCNA_00833 0.20 -1.2 898,772 + CCNA_00833 0.25 -1.9 898,772 + CCNA_00833 0.25 -2.3 898,772 + CCNA_00833 0.25 +0.3 898,780 - CCNA_00833 0.27 -2.6 898,780 - CCNA_00833 0.27 -1.5 898,780 - CCNA_00833 0.27 +0.6 898,780 - CCNA_00833 0.27 -1.8 898,814 - CCNA_00833 0.32 -2.3 898,814 - CCNA_00833 0.32 -0.9 898,906 + CCNA_00833 0.48 -1.6 898,941 - CCNA_00833 0.54 -1.7 898,963 + CCNA_00833 0.57 -1.4 898,971 - CCNA_00833 0.58 -0.9 898,994 + CCNA_00833 0.62 -1.0 899,061 + CCNA_00833 0.73 -1.2 899,079 - CCNA_00833 0.77 -1.6 899,139 - CCNA_00833 0.86 -1.0 899,144 - CCNA_00833 0.87 -1.5 899,213 - -0.1 899,216 - -2.1 899,262 - -1.7 899,361 - +0.3 899,361 - -0.8 899,376 - CCNA_03942 0.15 -1.6 899,392 - CCNA_03942 0.27 -2.9 899,420 + CCNA_03942 0.47 -1.1 899,428 - CCNA_03942 0.53 -0.2 899,629 + -1.0 899,639 + +2.7 899,665 + -0.2 899,665 + +0.6 899,665 + +0.4 899,665 + -1.8 899,673 - -2.1 899,673 - -1.8 899,673 - +0.6 899,675 + +0.3 899,678 - -0.9 899,683 - -1.4 899,737 - -1.7 899,752 - CCNA_00834 0.11 -1.1 899,755 + CCNA_00834 0.11 +0.7 899,978 + CCNA_00834 0.38 +0.8 899,988 + CCNA_00834 0.40 +1.9 900,007 + CCNA_00834 0.42 +1.3 900,059 - CCNA_00834 0.48 -2.0 900,065 - CCNA_00834 0.49 -1.7 900,065 - CCNA_00834 0.49 -0.1 900,089 + CCNA_00834 0.52 +1.6 900,089 + CCNA_00834 0.52 +2.6 900,127 + CCNA_00834 0.57 +3.4 900,147 + CCNA_00834 0.59 +2.9 900,148 + CCNA_00834 0.59 +2.4 900,150 - CCNA_00834 0.59 -3.5 900,155 - CCNA_00834 0.60 -2.4 900,156 - CCNA_00834 0.60 +0.3 900,156 - CCNA_00834 0.60 +0.4 900,156 - CCNA_00834 0.60 -3.2 900,236 - CCNA_00834 0.70 -1.4 900,322 + CCNA_00834 0.80 +2.7 900,322 + CCNA_00834 0.80 +2.5 900,322 + CCNA_00834 0.80 +2.7 900,322 + CCNA_00834 0.80 +2.7 900,322 + CCNA_00834 0.80 +3.2 900,322 + CCNA_00834 0.80 +2.8 900,322 + CCNA_00834 0.80 +2.7 900,322 + CCNA_00834 0.80 +2.6 900,322 + CCNA_00834 0.80 +2.7 900,332 + CCNA_00834 0.82 +2.6 900,332 + CCNA_00834 0.82 +3.4 900,568 - +0.6 900,587 - -0.2 900,599 - +1.9 900,605 - -1.8 900,615 + +0.6 900,623 - +0.3 900,625 - +0.3 900,648 - -0.9 900,664 + -0.4 900,682 + -0.7 900,682 + -0.2 900,682 + -0.6 900,682 + -1.2 900,687 + -1.2 900,687 + -0.5 900,688 + -1.0 900,690 - -0.3 900,690 - -0.5 900,690 - -1.4 900,695 - -0.7 900,695 - -2.3 900,695 - -0.7 900,704 + +2.5 900,733 + -0.8 900,751 - +0.9 900,762 + -1.3 900,770 - -0.7 900,785 - -0.0 900,790 + -1.8 900,790 + -2.2 900,790 + -2.4 900,790 + -2.7 900,790 + -2.7 900,790 + -0.8 900,790 + -3.3 900,790 + -2.3 900,790 + -0.1 900,798 - -1.1 900,798 - -0.4 900,798 - +0.3 900,798 - -0.5 900,798 - -1.7 900,798 - -1.4 900,811 + -0.1 900,819 - -1.3 900,851 - -1.0 900,990 - -1.2 901,012 + -0.7 901,012 + +1.2 901,013 + -1.9 901,020 - -0.0 901,020 - +0.3 901,037 + -1.0 901,045 - +0.6 901,045 - -1.1 901,045 - -2.1 901,109 - -1.0 901,114 - -1.3 901,124 - CCNA_00835 0.11 -2.3 901,124 - CCNA_00835 0.11 -1.1 901,162 + CCNA_00835 0.16 +0.4 901,162 + CCNA_00835 0.16 +0.2 901,162 + CCNA_00835 0.16 -1.4 901,360 + CCNA_00835 0.40 +1.4 901,360 + CCNA_00835 0.40 +1.6 901,405 + CCNA_00835 0.45 +0.3 901,410 - CCNA_00835 0.46 -0.9 901,424 + CCNA_00835 0.47 +0.4 901,461 + CCNA_00835 0.52 -2.4
Or see this region's nucleotide sequence