Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00144

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00142 and CCNA_00143 overlap by 1 nucleotidesCCNA_00143 and CCNA_00144 are separated by 34 nucleotidesCCNA_00144 and CCNA_00145 overlap by 8 nucleotidesCCNA_00145 and CCNA_00146 are separated by 24 nucleotides CCNA_00142: CCNA_00142 - endonuclease, at 154,535 to 154,912 _00142 CCNA_00143: CCNA_00143 - ribosomal RNA small subunit methyltransferase I, at 154,912 to 155,784 _00143 CCNA_00144: CCNA_00144 - oxygen-independent coproporphyrinogen-III oxidase, at 155,819 to 156,973 _00144 CCNA_00145: CCNA_00145 - xanthosine triphosphate pyrophosphatase, at 156,966 to 157,568 _00145 CCNA_00146: CCNA_00146 - glutathione S-transferase, at 157,593 to 158,186 _00146 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 154.867 kb on - strand, within CCNA_00142at 154.894 kb on + strandat 154.902 kb on - strandat 154.915 kb on + strandat 154.953 kb on - strandat 155.002 kb on - strand, within CCNA_00143at 155.014 kb on + strand, within CCNA_00143at 155.022 kb on - strand, within CCNA_00143at 155.031 kb on + strand, within CCNA_00143at 155.156 kb on - strand, within CCNA_00143at 155.186 kb on - strand, within CCNA_00143at 155.196 kb on - strand, within CCNA_00143at 155.308 kb on + strand, within CCNA_00143at 155.380 kb on + strand, within CCNA_00143at 155.387 kb on - strand, within CCNA_00143at 155.424 kb on + strand, within CCNA_00143at 155.465 kb on - strand, within CCNA_00143at 155.465 kb on - strand, within CCNA_00143at 155.486 kb on + strand, within CCNA_00143at 155.503 kb on - strand, within CCNA_00143at 155.508 kb on - strand, within CCNA_00143at 155.566 kb on - strand, within CCNA_00143at 155.599 kb on - strand, within CCNA_00143at 155.685 kb on + strand, within CCNA_00143at 155.693 kb on - strand, within CCNA_00143at 155.757 kb on + strandat 155.760 kb on - strandat 155.760 kb on - strandat 155.785 kb on - strandat 155.814 kb on - strandat 155.863 kb on - strandat 155.874 kb on + strandat 155.874 kb on + strandat 155.882 kb on - strandat 155.882 kb on - strandat 155.910 kb on + strandat 155.918 kb on - strandat 155.918 kb on - strandat 155.918 kb on - strandat 155.921 kb on + strandat 155.929 kb on + strandat 155.929 kb on + strandat 155.944 kb on + strand, within CCNA_00144at 155.944 kb on + strand, within CCNA_00144at 155.944 kb on + strand, within CCNA_00144at 155.951 kb on + strand, within CCNA_00144at 155.952 kb on - strand, within CCNA_00144at 155.959 kb on - strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.968 kb on + strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.976 kb on - strand, within CCNA_00144at 155.999 kb on + strand, within CCNA_00144at 156.000 kb on + strand, within CCNA_00144at 156.008 kb on - strand, within CCNA_00144at 156.008 kb on - strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.014 kb on + strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.022 kb on - strand, within CCNA_00144at 156.089 kb on - strand, within CCNA_00144at 156.092 kb on - strand, within CCNA_00144at 156.097 kb on - strand, within CCNA_00144at 156.154 kb on - strand, within CCNA_00144at 156.206 kb on - strand, within CCNA_00144at 156.211 kb on - strand, within CCNA_00144at 156.227 kb on - strand, within CCNA_00144at 156.227 kb on - strand, within CCNA_00144at 156.244 kb on + strand, within CCNA_00144at 156.244 kb on - strand, within CCNA_00144at 156.252 kb on - strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.288 kb on + strand, within CCNA_00144at 156.296 kb on - strand, within CCNA_00144at 156.324 kb on - strand, within CCNA_00144at 156.326 kb on + strand, within CCNA_00144at 156.334 kb on - strand, within CCNA_00144at 156.360 kb on - strand, within CCNA_00144at 156.361 kb on - strand, within CCNA_00144at 156.361 kb on - strand, within CCNA_00144at 156.385 kb on - strand, within CCNA_00144at 156.390 kb on + strand, within CCNA_00144at 156.390 kb on + strand, within CCNA_00144at 156.398 kb on - strand, within CCNA_00144at 156.408 kb on - strand, within CCNA_00144at 156.415 kb on - strand, within CCNA_00144at 156.433 kb on - strand, within CCNA_00144at 156.452 kb on + strand, within CCNA_00144at 156.452 kb on + strand, within CCNA_00144at 156.460 kb on - strand, within CCNA_00144at 156.460 kb on - strand, within CCNA_00144at 156.468 kb on + strand, within CCNA_00144at 156.468 kb on + strand, within CCNA_00144at 156.468 kb on + strand, within CCNA_00144at 156.476 kb on - strand, within CCNA_00144at 156.481 kb on - strand, within CCNA_00144at 156.540 kb on + strand, within CCNA_00144at 156.554 kb on + strand, within CCNA_00144at 156.556 kb on - strand, within CCNA_00144at 156.602 kb on - strand, within CCNA_00144at 156.605 kb on + strand, within CCNA_00144at 156.605 kb on + strand, within CCNA_00144at 156.623 kb on + strand, within CCNA_00144at 156.645 kb on + strand, within CCNA_00144at 156.645 kb on + strand, within CCNA_00144at 156.677 kb on + strand, within CCNA_00144at 156.688 kb on - strand, within CCNA_00144at 156.699 kb on + strand, within CCNA_00144at 156.802 kb on - strand, within CCNA_00144at 156.816 kb on - strand, within CCNA_00144at 156.819 kb on + strand, within CCNA_00144at 156.819 kb on + strand, within CCNA_00144at 156.819 kb on + strand, within CCNA_00144at 156.820 kb on - strand, within CCNA_00144at 156.827 kb on - strand, within CCNA_00144at 156.827 kb on - strand, within CCNA_00144at 156.845 kb on + strand, within CCNA_00144at 156.888 kb on + strandat 156.888 kb on + strandat 156.888 kb on + strandat 156.896 kb on - strandat 156.896 kb on - strandat 156.921 kb on + strandat 156.921 kb on + strandat 156.921 kb on + strandat 156.921 kb on + strandat 156.921 kb on + strandat 156.929 kb on - strandat 156.929 kb on - strandat 156.929 kb on - strandat 156.965 kb on - strandat 156.982 kb on + strandat 157.053 kb on + strand, within CCNA_00145at 157.053 kb on + strand, within CCNA_00145at 157.060 kb on + strand, within CCNA_00145at 157.061 kb on - strand, within CCNA_00145at 157.061 kb on - strand, within CCNA_00145at 157.061 kb on - strand, within CCNA_00145at 157.061 kb on - strand, within CCNA_00145at 157.061 kb on - strand, within CCNA_00145at 157.061 kb on - strand, within CCNA_00145at 157.062 kb on - strand, within CCNA_00145at 157.062 kb on - strand, within CCNA_00145at 157.080 kb on + strand, within CCNA_00145at 157.080 kb on + strand, within CCNA_00145at 157.093 kb on - strand, within CCNA_00145at 157.122 kb on + strand, within CCNA_00145at 157.130 kb on - strand, within CCNA_00145at 157.151 kb on - strand, within CCNA_00145at 157.151 kb on - strand, within CCNA_00145at 157.152 kb on - strand, within CCNA_00145at 157.157 kb on - strand, within CCNA_00145at 157.176 kb on + strand, within CCNA_00145at 157.176 kb on + strand, within CCNA_00145at 157.176 kb on + strand, within CCNA_00145at 157.184 kb on - strand, within CCNA_00145at 157.184 kb on - strand, within CCNA_00145at 157.187 kb on + strand, within CCNA_00145at 157.187 kb on + strand, within CCNA_00145at 157.197 kb on + strand, within CCNA_00145at 157.197 kb on + strand, within CCNA_00145at 157.233 kb on - strand, within CCNA_00145at 157.237 kb on - strand, within CCNA_00145at 157.237 kb on - strand, within CCNA_00145at 157.239 kb on + strand, within CCNA_00145at 157.239 kb on + strand, within CCNA_00145at 157.248 kb on - strand, within CCNA_00145at 157.269 kb on + strand, within CCNA_00145at 157.277 kb on - strand, within CCNA_00145at 157.277 kb on - strand, within CCNA_00145at 157.284 kb on + strand, within CCNA_00145at 157.288 kb on - strand, within CCNA_00145at 157.325 kb on - strand, within CCNA_00145at 157.325 kb on - strand, within CCNA_00145at 157.345 kb on - strand, within CCNA_00145at 157.345 kb on - strand, within CCNA_00145at 157.364 kb on + strand, within CCNA_00145at 157.364 kb on + strand, within CCNA_00145at 157.373 kb on + strand, within CCNA_00145at 157.374 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.390 kb on + strand, within CCNA_00145at 157.390 kb on + strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.434 kb on - strand, within CCNA_00145at 157.445 kb on + strand, within CCNA_00145at 157.500 kb on + strand, within CCNA_00145at 157.516 kb on + strandat 157.517 kb on + strandat 157.538 kb on + strandat 157.550 kb on + strandat 157.550 kb on + strandat 157.681 kb on - strand, within CCNA_00146at 157.695 kb on - strand, within CCNA_00146at 157.705 kb on - strand, within CCNA_00146at 157.741 kb on - strand, within CCNA_00146at 157.748 kb on - strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.775 kb on + strand, within CCNA_00146at 157.781 kb on - strand, within CCNA_00146at 157.814 kb on + strand, within CCNA_00146at 157.814 kb on + strand, within CCNA_00146at 157.860 kb on + strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.887 kb on + strand, within CCNA_00146at 157.902 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.948 kb on + strand, within CCNA_00146at 157.956 kb on - strand, within CCNA_00146at 157.956 kb on - strand, within CCNA_00146at 157.965 kb on + strand, within CCNA_00146

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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154,867 - CCNA_00142 0.88 +1.6
154,894 + +0.4
154,902 - +1.7
154,915 + -2.3
154,953 - -0.8
155,002 - CCNA_00143 0.10 -0.2
155,014 + CCNA_00143 0.12 -1.6
155,022 - CCNA_00143 0.13 +0.2
155,031 + CCNA_00143 0.14 -0.6
155,156 - CCNA_00143 0.28 -2.2
155,186 - CCNA_00143 0.31 -3.0
155,196 - CCNA_00143 0.33 -1.8
155,308 + CCNA_00143 0.45 -1.1
155,380 + CCNA_00143 0.54 -2.6
155,387 - CCNA_00143 0.54 +0.1
155,424 + CCNA_00143 0.59 -1.3
155,465 - CCNA_00143 0.63 -2.3
155,465 - CCNA_00143 0.63 -3.3
155,486 + CCNA_00143 0.66 -0.4
155,503 - CCNA_00143 0.68 -2.8
155,508 - CCNA_00143 0.68 +0.7
155,566 - CCNA_00143 0.75 -2.3
155,599 - CCNA_00143 0.79 +0.2
155,685 + CCNA_00143 0.89 -2.9
155,693 - CCNA_00143 0.89 -0.4
155,757 + -1.9
155,760 - -2.0
155,760 - -2.2
155,785 - +0.3
155,814 - +0.5
155,863 - -1.1
155,874 + -2.1
155,874 + -1.1
155,882 - +1.2
155,882 - -0.9
155,910 + +0.4
155,918 - +1.2
155,918 - -0.1
155,918 - -0.7
155,921 + +1.7
155,929 + -1.3
155,929 + -1.2
155,944 + CCNA_00144 0.11 -1.7
155,944 + CCNA_00144 0.11 -2.5
155,944 + CCNA_00144 0.11 -2.5
155,951 + CCNA_00144 0.11 -3.1
155,952 - CCNA_00144 0.12 -0.8
155,959 - CCNA_00144 0.12 -2.7
155,968 + CCNA_00144 0.13 -2.5
155,968 + CCNA_00144 0.13 -1.4
155,968 + CCNA_00144 0.13 -1.3
155,976 - CCNA_00144 0.14 -1.3
155,976 - CCNA_00144 0.14 -1.8
155,976 - CCNA_00144 0.14 -1.2
155,976 - CCNA_00144 0.14 +0.2
155,976 - CCNA_00144 0.14 +0.3
155,976 - CCNA_00144 0.14 -1.9
155,999 + CCNA_00144 0.16 -1.9
156,000 + CCNA_00144 0.16 -0.0
156,008 - CCNA_00144 0.16 +0.3
156,008 - CCNA_00144 0.16 -1.0
156,014 + CCNA_00144 0.17 -2.3
156,014 + CCNA_00144 0.17 -2.1
156,014 + CCNA_00144 0.17 -0.3
156,014 + CCNA_00144 0.17 -1.5
156,014 + CCNA_00144 0.17 -1.1
156,022 - CCNA_00144 0.18 +1.3
156,022 - CCNA_00144 0.18 -0.1
156,022 - CCNA_00144 0.18 -0.1
156,022 - CCNA_00144 0.18 -1.0
156,022 - CCNA_00144 0.18 +0.8
156,022 - CCNA_00144 0.18 +2.5
156,089 - CCNA_00144 0.23 -1.5
156,092 - CCNA_00144 0.24 +0.5
156,097 - CCNA_00144 0.24 +0.0
156,154 - CCNA_00144 0.29 +0.7
156,206 - CCNA_00144 0.34 +0.7
156,211 - CCNA_00144 0.34 -0.1
156,227 - CCNA_00144 0.35 +0.5
156,227 - CCNA_00144 0.35 -0.1
156,244 + CCNA_00144 0.37 -0.8
156,244 - CCNA_00144 0.37 -0.9
156,252 - CCNA_00144 0.37 -0.3
156,288 + CCNA_00144 0.41 +2.3
156,288 + CCNA_00144 0.41 +0.1
156,296 - CCNA_00144 0.41 -1.3
156,324 - CCNA_00144 0.44 +0.7
156,326 + CCNA_00144 0.44 -0.1
156,334 - CCNA_00144 0.45 -0.2
156,360 - CCNA_00144 0.47 -0.1
156,361 - CCNA_00144 0.47 +0.1
156,361 - CCNA_00144 0.47 -1.4
156,385 - CCNA_00144 0.49 -0.4
156,390 + CCNA_00144 0.49 -0.8
156,390 + CCNA_00144 0.49 -0.4
156,398 - CCNA_00144 0.50 -0.4
156,408 - CCNA_00144 0.51 -0.4
156,415 - CCNA_00144 0.52 +0.7
156,433 - CCNA_00144 0.53 -0.5
156,452 + CCNA_00144 0.55 -0.3
156,452 + CCNA_00144 0.55 -2.7
156,460 - CCNA_00144 0.55 -0.6
156,460 - CCNA_00144 0.55 -1.3
156,468 + CCNA_00144 0.56 -0.7
156,468 + CCNA_00144 0.56 -0.1
156,468 + CCNA_00144 0.56 +0.2
156,476 - CCNA_00144 0.57 -2.0
156,481 - CCNA_00144 0.57 -0.6
156,540 + CCNA_00144 0.62 -0.2
156,554 + CCNA_00144 0.64 +0.7
156,556 - CCNA_00144 0.64 -1.6
156,602 - CCNA_00144 0.68 +2.7
156,605 + CCNA_00144 0.68 +0.0
156,605 + CCNA_00144 0.68 -1.0
156,623 + CCNA_00144 0.70 +0.2
156,645 + CCNA_00144 0.72 -1.3
156,645 + CCNA_00144 0.72 +0.4
156,677 + CCNA_00144 0.74 -0.4
156,688 - CCNA_00144 0.75 +0.6
156,699 + CCNA_00144 0.76 -1.8
156,802 - CCNA_00144 0.85 +0.2
156,816 - CCNA_00144 0.86 -0.4
156,819 + CCNA_00144 0.87 -1.5
156,819 + CCNA_00144 0.87 -0.7
156,819 + CCNA_00144 0.87 -2.2
156,820 - CCNA_00144 0.87 -1.8
156,827 - CCNA_00144 0.87 +0.1
156,827 - CCNA_00144 0.87 +0.3
156,845 + CCNA_00144 0.89 -0.5
156,888 + -0.6
156,888 + -1.5
156,888 + -1.0
156,896 - +1.9
156,896 - +1.7
156,921 + -1.3
156,921 + -0.6
156,921 + +0.2
156,921 + -1.1
156,921 + -2.2
156,929 - -0.4
156,929 - +0.2
156,929 - -0.8
156,965 - +1.4
156,982 + +1.4
157,053 + CCNA_00145 0.14 +0.7
157,053 + CCNA_00145 0.14 -1.0
157,060 + CCNA_00145 0.16 -0.5
157,061 - CCNA_00145 0.16 +0.2
157,061 - CCNA_00145 0.16 +1.5
157,061 - CCNA_00145 0.16 -2.1
157,061 - CCNA_00145 0.16 +1.3
157,061 - CCNA_00145 0.16 -1.1
157,061 - CCNA_00145 0.16 +0.4
157,062 - CCNA_00145 0.16 +1.3
157,062 - CCNA_00145 0.16 -0.7
157,080 + CCNA_00145 0.19 -2.4
157,080 + CCNA_00145 0.19 +0.2
157,093 - CCNA_00145 0.21 +1.6
157,122 + CCNA_00145 0.26 +0.2
157,130 - CCNA_00145 0.27 +0.4
157,151 - CCNA_00145 0.31 +0.3
157,151 - CCNA_00145 0.31 +0.3
157,152 - CCNA_00145 0.31 -0.9
157,157 - CCNA_00145 0.32 -2.3
157,176 + CCNA_00145 0.35 +0.2
157,176 + CCNA_00145 0.35 +0.5
157,176 + CCNA_00145 0.35 -1.2
157,184 - CCNA_00145 0.36 +1.2
157,184 - CCNA_00145 0.36 +1.9
157,187 + CCNA_00145 0.37 +0.4
157,187 + CCNA_00145 0.37 -0.9
157,197 + CCNA_00145 0.38 +0.7
157,197 + CCNA_00145 0.38 -0.8
157,233 - CCNA_00145 0.44 +1.5
157,237 - CCNA_00145 0.45 +0.5
157,237 - CCNA_00145 0.45 +0.5
157,239 + CCNA_00145 0.45 -0.5
157,239 + CCNA_00145 0.45 -0.1
157,248 - CCNA_00145 0.47 +0.0
157,269 + CCNA_00145 0.50 -0.1
157,277 - CCNA_00145 0.52 -0.1
157,277 - CCNA_00145 0.52 +0.9
157,284 + CCNA_00145 0.53 +1.7
157,288 - CCNA_00145 0.53 +0.3
157,325 - CCNA_00145 0.60 -0.0
157,325 - CCNA_00145 0.60 -0.1
157,345 - CCNA_00145 0.63 +0.0
157,345 - CCNA_00145 0.63 -0.3
157,364 + CCNA_00145 0.66 -1.3
157,364 + CCNA_00145 0.66 -0.1
157,373 + CCNA_00145 0.67 -1.3
157,374 - CCNA_00145 0.68 -0.7
157,381 - CCNA_00145 0.69 -0.7
157,381 - CCNA_00145 0.69 +2.5
157,381 - CCNA_00145 0.69 -0.4
157,390 + CCNA_00145 0.70 -1.3
157,390 + CCNA_00145 0.70 -1.6
157,398 - CCNA_00145 0.72 -0.7
157,398 - CCNA_00145 0.72 -0.4
157,398 - CCNA_00145 0.72 +0.2
157,398 - CCNA_00145 0.72 -1.1
157,398 - CCNA_00145 0.72 +2.1
157,398 - CCNA_00145 0.72 +0.0
157,434 - CCNA_00145 0.78 +0.4
157,445 + CCNA_00145 0.79 -1.2
157,500 + CCNA_00145 0.89 -1.4
157,516 + +2.7
157,517 + +3.2
157,538 + -2.6
157,550 + -2.0
157,550 + +0.4
157,681 - CCNA_00146 0.15 +0.0
157,695 - CCNA_00146 0.17 -0.3
157,705 - CCNA_00146 0.19 -1.1
157,741 - CCNA_00146 0.25 -2.3
157,748 - CCNA_00146 0.26 -1.2
157,773 + CCNA_00146 0.30 -0.4
157,773 + CCNA_00146 0.30 -0.1
157,773 + CCNA_00146 0.30 -0.4
157,775 + CCNA_00146 0.31 +2.2
157,781 - CCNA_00146 0.32 +0.1
157,814 + CCNA_00146 0.37 -0.3
157,814 + CCNA_00146 0.37 +1.4
157,860 + CCNA_00146 0.45 -1.8
157,868 - CCNA_00146 0.46 -2.0
157,868 - CCNA_00146 0.46 -0.7
157,868 - CCNA_00146 0.46 +1.7
157,868 - CCNA_00146 0.46 -0.5
157,868 - CCNA_00146 0.46 -0.4
157,887 + CCNA_00146 0.49 +0.6
157,902 + CCNA_00146 0.52 -0.2
157,948 + CCNA_00146 0.60 +0.8
157,948 + CCNA_00146 0.60 +0.9
157,948 + CCNA_00146 0.60 +1.2
157,956 - CCNA_00146 0.61 +0.0
157,956 - CCNA_00146 0.61 -1.4
157,965 + CCNA_00146 0.63 +1.8

Or see this region's nucleotide sequence