Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15710

Experiment: R2A with nitrate 100 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrate 100 mM
3,959,080	-				+0.3
3,959,150	+				-1.1
3,959,158	-				+1.1
3,959,159	+				+0.5
3,959,160	-				-0.2
3,959,160	-				-0.3
3,959,213	+		CA265_RS15705	0.13	+1.0
3,959,307	+		CA265_RS15705	0.33	+1.2
3,959,307	+		CA265_RS15705	0.33	-0.0
3,959,307	+		CA265_RS15705	0.33	-0.1
3,959,308	-		CA265_RS15705	0.33	-0.9
3,959,308	-		CA265_RS15705	0.33	-0.7
3,959,308	-		CA265_RS15705	0.33	+0.4
3,959,316	+		CA265_RS15705	0.35	-0.8
3,959,322	+		CA265_RS15705	0.36	+2.2
3,959,351	-		CA265_RS15705	0.42	+0.7
3,959,376	+		CA265_RS15705	0.48	-0.7
3,959,377	-		CA265_RS15705	0.48	-1.3
3,959,393	+		CA265_RS15705	0.51	-0.8
3,959,398	-		CA265_RS15705	0.52	+0.5
3,959,400	+		CA265_RS15705	0.53	-0.1
3,959,400	+		CA265_RS15705	0.53	-1.6
3,959,465	+		CA265_RS15705	0.66	+0.3
3,959,466	-		CA265_RS15705	0.66	+0.1
3,959,480	+		CA265_RS15705	0.69	-1.3
3,959,497	+		CA265_RS15705	0.73	-0.3
3,959,542	-		CA265_RS15705	0.82	+0.1
3,959,542	-		CA265_RS15705	0.82	-0.7
3,959,551	+		CA265_RS15705	0.84	-0.2
3,959,669	-				+0.1
3,959,669	-				-0.6
3,959,673	+				+0.1
3,959,674	-				-0.0
3,959,674	-				-1.1
3,959,676	+				-0.8
3,959,678	+				+0.6
3,959,683	+				+1.1
3,959,688	+				+0.7
3,959,840	-				-0.7
3,959,873	-				-0.7
3,959,884	+				+1.7
3,959,885	-				+0.4
3,959,885	-				-0.2
3,959,888	+				+0.5
3,959,916	-				-0.4
3,960,028	-				-0.2
3,960,030	+				+0.5
3,960,030	+				-0.3
3,960,063	-				+0.2
3,960,081	+				-0.2
3,960,089	-				+0.1
3,960,108	+				+0.5
3,960,111	-				-1.1
3,960,117	+				-0.1
3,960,155	+				+0.1
3,960,155	+				-0.3
3,960,170	+				+0.3
3,960,195	+				-0.8
3,960,195	+				-0.7
3,960,286	-		CA265_RS15710	0.13	-0.0
3,960,287	+		CA265_RS15710	0.13	-0.0
3,960,287	+		CA265_RS15710	0.13	-0.1
3,960,372	+		CA265_RS15710	0.17	+0.3
3,960,373	-		CA265_RS15710	0.17	-0.9
3,960,378	-		CA265_RS15710	0.17	-0.0
3,960,416	+		CA265_RS15710	0.19	+0.1
3,960,416	+		CA265_RS15710	0.19	-0.2
3,960,416	+		CA265_RS15710	0.19	-1.5
3,960,416	+		CA265_RS15710	0.19	+0.5
3,960,417	-		CA265_RS15710	0.19	-0.7
3,960,453	+		CA265_RS15710	0.21	-1.2
3,960,453	+		CA265_RS15710	0.21	+0.4
3,960,453	+		CA265_RS15710	0.21	-0.9
3,960,453	+		CA265_RS15710	0.21	+0.1
3,960,454	-		CA265_RS15710	0.21	-0.2
3,960,454	-		CA265_RS15710	0.21	+0.8
3,960,460	+		CA265_RS15710	0.21	-1.7
3,960,460	+		CA265_RS15710	0.21	-0.6
3,960,483	+		CA265_RS15710	0.22	+0.0
3,960,494	-		CA265_RS15710	0.23	-0.8
3,960,521	+		CA265_RS15710	0.24	-1.2
3,960,521	+		CA265_RS15710	0.24	+0.2
3,960,522	-		CA265_RS15710	0.24	+0.1
3,960,542	-		CA265_RS15710	0.25	-0.4
3,960,550	-		CA265_RS15710	0.25	+0.7
3,960,550	-		CA265_RS15710	0.25	+0.1
3,960,567	+		CA265_RS15710	0.26	+0.7
3,960,568	-		CA265_RS15710	0.26	-0.1
3,960,568	-		CA265_RS15710	0.26	+0.1
3,960,640	+		CA265_RS15710	0.30	+1.4
3,960,642	-		CA265_RS15710	0.30	-0.1
3,960,646	-		CA265_RS15710	0.30	+1.1
3,960,691	-		CA265_RS15710	0.32	+0.1
3,960,722	+		CA265_RS15710	0.34	-0.7
3,960,722	+		CA265_RS15710	0.34	-0.3
3,960,729	-		CA265_RS15710	0.34	+1.6
3,960,729	-		CA265_RS15710	0.34	-0.3
3,960,750	+		CA265_RS15710	0.35	+2.1
3,960,784	+		CA265_RS15710	0.36	-1.3
3,960,788	+		CA265_RS15710	0.37	+2.1
3,960,809	+		CA265_RS15710	0.38	+0.7
3,960,810	-		CA265_RS15710	0.38	+0.1
3,960,901	-		CA265_RS15710	0.42	-0.1
3,961,071	-		CA265_RS15710	0.50	-0.3
3,961,111	-		CA265_RS15710	0.52	-0.2
3,961,128	-		CA265_RS15710	0.53	-0.4
3,961,156	+		CA265_RS15710	0.54	+0.9
3,961,160	+		CA265_RS15710	0.54	+0.7
3,961,166	+		CA265_RS15710	0.55	-0.2
3,961,189	-		CA265_RS15710	0.56	-0.1
3,961,214	+		CA265_RS15710	0.57	+0.3
3,961,237	+		CA265_RS15710	0.58	+0.2
3,961,238	-		CA265_RS15710	0.58	+0.7
3,961,238	-		CA265_RS15710	0.58	-0.3
3,961,271	+		CA265_RS15710	0.60	-0.1
3,961,271	+		CA265_RS15710	0.60	+0.5
3,961,272	-		CA265_RS15710	0.60	-0.4
3,961,272	-		CA265_RS15710	0.60	+0.3
3,961,272	-		CA265_RS15710	0.60	+1.7
3,961,355	+		CA265_RS15710	0.64	-1.0
3,961,439	+		CA265_RS15710	0.68	-0.7
3,961,472	+		CA265_RS15710	0.69	-0.2
3,961,473	-		CA265_RS15710	0.69	-1.5
3,961,608	-		CA265_RS15710	0.76	-0.9
3,961,608	-		CA265_RS15710	0.76	+0.0
3,961,623	-		CA265_RS15710	0.76	-0.8
3,961,647	+		CA265_RS15710	0.77	+0.5
3,961,648	-		CA265_RS15710	0.77	+1.5
3,961,686	+		CA265_RS15710	0.79	+2.5
3,961,697	+		CA265_RS15710	0.80	+0.4
3,961,698	-		CA265_RS15710	0.80	+0.2
3,961,698	-		CA265_RS15710	0.80	+0.2
3,961,703	-		CA265_RS15710	0.80	+0.5
3,961,760	-		CA265_RS15710	0.83	+0.9
3,961,770	+		CA265_RS15710	0.83	+0.5
3,961,773	+		CA265_RS15710	0.83	-0.0
3,961,773	+		CA265_RS15710	0.83	+0.6
3,961,782	+		CA265_RS15710	0.84	+0.8
3,961,799	-		CA265_RS15710	0.85	-0.4
3,961,821	-		CA265_RS15710	0.86	-1.8
3,961,829	-		CA265_RS15710	0.86	+0.2
3,961,896	+		CA265_RS15710	0.89	-0.5
3,961,961	-				-0.2
3,961,999	+				+0.5
3,961,999	+				-0.2
3,961,999	+				+0.4
3,962,000	-				+0.3
3,962,037	+				+0.1
3,962,037	+				-0.3
3,962,170	+				-0.2
3,962,175	-				-0.2
3,962,187	+				-1.1
3,962,188	-				+0.1
3,962,188	-				+0.3
3,962,222	+				+1.1
3,962,222	+				+0.5
3,962,240	+				-0.1
3,962,240	+				-1.3
3,962,241	-				-0.7
3,962,288	+				+0.5
3,962,311	+				-0.7
3,962,311	+				-0.5
3,962,403	-				+0.3
3,962,465	+		CA265_RS15715	0.14	-0.1
3,962,468	-		CA265_RS15715	0.14	+0.1
3,962,471	+		CA265_RS15715	0.14	+0.2
3,962,471	+				+1.7
3,962,539	-		CA265_RS15715	0.20	-0.3
3,962,539	-		CA265_RS15715	0.20	+0.1
3,962,539	-		CA265_RS15715	0.20	-0.2
3,962,539	-		CA265_RS15715	0.20	-0.5
3,962,618	+		CA265_RS15715	0.26	-0.3
3,962,625	+		CA265_RS15715	0.26	-0.5
3,962,625	+		CA265_RS15715	0.26	-0.4
3,962,626	-		CA265_RS15715	0.26	+0.2
3,962,626	-		CA265_RS15715	0.26	-1.1
3,962,749	+		CA265_RS15715	0.36	-0.4
3,962,794	+		CA265_RS15715	0.40	-1.8
3,962,882	-		CA265_RS15715	0.47	-0.8
3,962,910	+		CA265_RS15715	0.49	-0.5
3,962,910	+		CA265_RS15715	0.49	+0.2
3,962,915	-		CA265_RS15715	0.50	+0.4
3,962,969	-		CA265_RS15715	0.54	+0.0
3,963,073	+		CA265_RS15715	0.62	+0.6
3,963,110	+		CA265_RS15715	0.65	-0.6