Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16255 and BPHYT_RS16260 are separated by 132 nucleotides BPHYT_RS16260 and BPHYT_RS16265 are separated by 280 nucleotides
BPHYT_RS16255: BPHYT_RS16255 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 3,690,122 to 3,691,012
_RS16255
BPHYT_RS16260: BPHYT_RS16260 - fructose-bisphosphate aldolase, at 3,691,145 to 3,692,209
_RS16260
BPHYT_RS16265: BPHYT_RS16265 - hypothetical protein, at 3,692,490 to 3,693,926
_RS16265
Position (kb) 3691
3692
3693 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 3690.166 kb on - strand at 3690.427 kb on - strand, within BPHYT_RS16255 at 3690.445 kb on - strand, within BPHYT_RS16255 at 3690.445 kb on - strand, within BPHYT_RS16255 at 3690.445 kb on - strand, within BPHYT_RS16255 at 3690.445 kb on - strand, within BPHYT_RS16255 at 3690.446 kb on + strand, within BPHYT_RS16255 at 3690.447 kb on - strand, within BPHYT_RS16255 at 3690.447 kb on - strand, within BPHYT_RS16255 at 3690.943 kb on - strand at 3690.943 kb on - strand at 3690.943 kb on - strand at 3691.007 kb on - strand at 3691.099 kb on + strand at 3691.100 kb on - strand at 3691.179 kb on + strand at 3691.180 kb on - strand at 3692.215 kb on - strand at 3692.223 kb on - strand at 3692.495 kb on - strand at 3692.495 kb on - strand at 3692.526 kb on - strand at 3692.526 kb on - strand at 3692.594 kb on - strand at 3692.684 kb on - strand, within BPHYT_RS16265 at 3693.126 kb on - strand, within BPHYT_RS16265
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,690,166 - +0.6 3,690,427 - BPHYT_RS16255 0.34 -2.7 3,690,445 - BPHYT_RS16255 0.36 -2.6 3,690,445 - BPHYT_RS16255 0.36 -1.9 3,690,445 - BPHYT_RS16255 0.36 -5.5 3,690,445 - BPHYT_RS16255 0.36 -3.9 3,690,446 + BPHYT_RS16255 0.36 -1.8 3,690,447 - BPHYT_RS16255 0.36 -1.6 3,690,447 - BPHYT_RS16255 0.36 -2.0 3,690,943 - -2.5 3,690,943 - -2.6 3,690,943 - -3.0 3,691,007 - -2.8 3,691,099 + -2.8 3,691,100 - +0.1 3,691,179 + -2.6 3,691,180 - +0.2 3,692,215 - -0.2 3,692,223 - -0.1 3,692,495 - +0.1 3,692,495 - +0.8 3,692,526 - -0.5 3,692,526 - +0.3 3,692,594 - -0.8 3,692,684 - BPHYT_RS16265 0.14 -0.3 3,693,126 - BPHYT_RS16265 0.44 -0.2
Or see this region's nucleotide sequence