Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08120

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08110 and ABIE51_RS08115 are separated by 182 nucleotidesABIE51_RS08115 and ABIE51_RS08120 overlap by 4 nucleotidesABIE51_RS08120 and ABIE51_RS08125 overlap by 14 nucleotidesABIE51_RS08125 and ABIE51_RS08130 overlap by 4 nucleotides ABIE51_RS08110: ABIE51_RS08110 - M48 family metallopeptidase, at 1,728,209 to 1,728,976 _RS08110 ABIE51_RS08115: ABIE51_RS08115 - pyroglutamyl-peptidase I, at 1,729,159 to 1,729,818 _RS08115 ABIE51_RS08120: ABIE51_RS08120 - DUF979 domain-containing protein, at 1,729,815 to 1,730,780 _RS08120 ABIE51_RS08125: ABIE51_RS08125 - DUF969 domain-containing protein, at 1,730,767 to 1,731,486 _RS08125 ABIE51_RS08130: ABIE51_RS08130 - 5-oxoprolinase subunit PxpA, at 1,731,483 to 1,732,226 _RS08130 Position (kb) 1729 1730 1731Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1728.956 kb on + strandat 1728.956 kb on + strandat 1728.957 kb on - strandat 1728.957 kb on - strandat 1729.299 kb on - strand, within ABIE51_RS08115at 1729.361 kb on + strand, within ABIE51_RS08115at 1729.361 kb on + strand, within ABIE51_RS08115at 1729.362 kb on - strand, within ABIE51_RS08115at 1729.362 kb on - strand, within ABIE51_RS08115at 1729.382 kb on + strand, within ABIE51_RS08115at 1729.382 kb on + strand, within ABIE51_RS08115at 1729.382 kb on + strand, within ABIE51_RS08115at 1729.383 kb on - strand, within ABIE51_RS08115at 1729.383 kb on - strand, within ABIE51_RS08115at 1729.383 kb on - strand, within ABIE51_RS08115at 1729.383 kb on - strand, within ABIE51_RS08115at 1729.469 kb on + strand, within ABIE51_RS08115at 1729.834 kb on + strandat 1729.834 kb on + strandat 1729.835 kb on - strandat 1729.835 kb on - strandat 1730.759 kb on - strandat 1730.759 kb on - strandat 1731.467 kb on + strandat 1731.467 kb on + strandat 1731.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,728,956 + +0.3
1,728,956 + -0.1
1,728,957 - -0.5
1,728,957 - -2.4
1,729,299 - ABIE51_RS08115 0.21 -0.0
1,729,361 + ABIE51_RS08115 0.31 -0.5
1,729,361 + ABIE51_RS08115 0.31 -0.6
1,729,362 - ABIE51_RS08115 0.31 -0.3
1,729,362 - ABIE51_RS08115 0.31 -1.1
1,729,382 + ABIE51_RS08115 0.34 +0.3
1,729,382 + ABIE51_RS08115 0.34 +0.6
1,729,382 + ABIE51_RS08115 0.34 +0.3
1,729,383 - ABIE51_RS08115 0.34 +0.1
1,729,383 - ABIE51_RS08115 0.34 +3.5
1,729,383 - ABIE51_RS08115 0.34 -0.5
1,729,383 - ABIE51_RS08115 0.34 -0.0
1,729,469 + ABIE51_RS08115 0.47 +0.2
1,729,834 + -0.2
1,729,834 + +1.0
1,729,835 - -0.5
1,729,835 - -0.1
1,730,759 - +0.0
1,730,759 - -0.3
1,731,467 + +0.3
1,731,467 + +0.4
1,731,468 - -0.4

Or see this region's nucleotide sequence