Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS08110 and ABIE51_RS08115 are separated by 182 nucleotides ABIE51_RS08115 and ABIE51_RS08120 overlap by 4 nucleotides ABIE51_RS08120 and ABIE51_RS08125 overlap by 14 nucleotides ABIE51_RS08125 and ABIE51_RS08130 overlap by 4 nucleotides
ABIE51_RS08110: ABIE51_RS08110 - M48 family metallopeptidase, at 1,728,209 to 1,728,976
_RS08110
ABIE51_RS08115: ABIE51_RS08115 - pyroglutamyl-peptidase I, at 1,729,159 to 1,729,818
_RS08115
ABIE51_RS08120: ABIE51_RS08120 - DUF979 domain-containing protein, at 1,729,815 to 1,730,780
_RS08120
ABIE51_RS08125: ABIE51_RS08125 - DUF969 domain-containing protein, at 1,730,767 to 1,731,486
_RS08125
ABIE51_RS08130: ABIE51_RS08130 - 5-oxoprolinase subunit PxpA, at 1,731,483 to 1,732,226
_RS08130
Position (kb)
1729
1730
1731 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1728.956 kb on + strand at 1728.956 kb on + strand at 1728.957 kb on - strand at 1728.957 kb on - strand at 1729.299 kb on - strand, within ABIE51_RS08115 at 1729.361 kb on + strand, within ABIE51_RS08115 at 1729.361 kb on + strand, within ABIE51_RS08115 at 1729.362 kb on - strand, within ABIE51_RS08115 at 1729.362 kb on - strand, within ABIE51_RS08115 at 1729.382 kb on + strand, within ABIE51_RS08115 at 1729.382 kb on + strand, within ABIE51_RS08115 at 1729.382 kb on + strand, within ABIE51_RS08115 at 1729.383 kb on - strand, within ABIE51_RS08115 at 1729.383 kb on - strand, within ABIE51_RS08115 at 1729.383 kb on - strand, within ABIE51_RS08115 at 1729.383 kb on - strand, within ABIE51_RS08115 at 1729.469 kb on + strand, within ABIE51_RS08115 at 1729.834 kb on + strand at 1729.834 kb on + strand at 1729.835 kb on - strand at 1729.835 kb on - strand at 1730.759 kb on - strand at 1730.759 kb on - strand at 1731.467 kb on + strand at 1731.467 kb on + strand at 1731.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,728,956 + +0.3 1,728,956 + -0.1 1,728,957 - -0.5 1,728,957 - -2.4 1,729,299 - ABIE51_RS08115 0.21 -0.0 1,729,361 + ABIE51_RS08115 0.31 -0.5 1,729,361 + ABIE51_RS08115 0.31 -0.6 1,729,362 - ABIE51_RS08115 0.31 -0.3 1,729,362 - ABIE51_RS08115 0.31 -1.1 1,729,382 + ABIE51_RS08115 0.34 +0.3 1,729,382 + ABIE51_RS08115 0.34 +0.6 1,729,382 + ABIE51_RS08115 0.34 +0.3 1,729,383 - ABIE51_RS08115 0.34 +0.1 1,729,383 - ABIE51_RS08115 0.34 +3.5 1,729,383 - ABIE51_RS08115 0.34 -0.5 1,729,383 - ABIE51_RS08115 0.34 -0.0 1,729,469 + ABIE51_RS08115 0.47 +0.2 1,729,834 + -0.2 1,729,834 + +1.0 1,729,835 - -0.5 1,729,835 - -0.1 1,730,759 - +0.0 1,730,759 - -0.3 1,731,467 + +0.3 1,731,467 + +0.4 1,731,468 - -0.4
Or see this region's nucleotide sequence