Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06850

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06845 and ABIE51_RS06850 are separated by 150 nucleotidesABIE51_RS06850 and ABIE51_RS06855 are separated by 221 nucleotides ABIE51_RS06845: ABIE51_RS06845 - DNA polymerase III subunit alpha, at 1,470,011 to 1,473,589 _RS06845 ABIE51_RS06850: ABIE51_RS06850 - YkvA family protein, at 1,473,740 to 1,474,366 _RS06850 ABIE51_RS06855: ABIE51_RS06855 - YkvA family protein, at 1,474,588 to 1,475,226 _RS06855 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -1 0 1 2at 1473.603 kb on + strandat 1473.603 kb on + strandat 1473.603 kb on + strandat 1473.603 kb on + strandat 1473.604 kb on - strandat 1473.783 kb on + strandat 1473.783 kb on + strandat 1473.784 kb on - strandat 1473.918 kb on + strand, within ABIE51_RS06850at 1474.032 kb on + strand, within ABIE51_RS06850at 1474.032 kb on + strand, within ABIE51_RS06850at 1474.032 kb on + strand, within ABIE51_RS06850at 1474.032 kb on + strand, within ABIE51_RS06850at 1474.032 kb on + strand, within ABIE51_RS06850at 1474.033 kb on - strand, within ABIE51_RS06850at 1474.033 kb on - strand, within ABIE51_RS06850at 1474.033 kb on - strand, within ABIE51_RS06850at 1474.033 kb on - strand, within ABIE51_RS06850at 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.317 kb on + strandat 1474.318 kb on - strandat 1474.318 kb on - strandat 1474.318 kb on - strandat 1474.318 kb on - strandat 1474.318 kb on - strandat 1474.318 kb on - strandat 1474.318 kb on - strandat 1474.652 kb on + strand, within ABIE51_RS06855at 1474.653 kb on - strand, within ABIE51_RS06855at 1474.653 kb on - strand, within ABIE51_RS06855at 1474.677 kb on - strand, within ABIE51_RS06855at 1474.766 kb on + strand, within ABIE51_RS06855at 1474.766 kb on + strand, within ABIE51_RS06855at 1474.766 kb on + strand, within ABIE51_RS06855at 1474.766 kb on + strand, within ABIE51_RS06855at 1474.767 kb on - strand, within ABIE51_RS06855at 1474.767 kb on - strand, within ABIE51_RS06855at 1474.767 kb on - strand, within ABIE51_RS06855at 1474.775 kb on + strand, within ABIE51_RS06855at 1474.776 kb on - strand, within ABIE51_RS06855at 1474.776 kb on - strand, within ABIE51_RS06855at 1474.776 kb on - strand, within ABIE51_RS06855at 1474.889 kb on + strand, within ABIE51_RS06855at 1474.889 kb on + strand, within ABIE51_RS06855at 1474.889 kb on + strand, within ABIE51_RS06855at 1474.889 kb on + strand, within ABIE51_RS06855

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,473,603 + -0.1
1,473,603 + -0.8
1,473,603 + +0.1
1,473,603 + -0.1
1,473,604 - -0.5
1,473,783 + -0.2
1,473,783 + -1.3
1,473,784 - +0.2
1,473,918 + ABIE51_RS06850 0.28 +0.5
1,474,032 + ABIE51_RS06850 0.47 +0.4
1,474,032 + ABIE51_RS06850 0.47 -1.2
1,474,032 + ABIE51_RS06850 0.47 +0.7
1,474,032 + ABIE51_RS06850 0.47 +0.0
1,474,032 + ABIE51_RS06850 0.47 -1.3
1,474,033 - ABIE51_RS06850 0.47 -0.4
1,474,033 - ABIE51_RS06850 0.47 -0.4
1,474,033 - ABIE51_RS06850 0.47 -0.0
1,474,033 - ABIE51_RS06850 0.47 -1.0
1,474,317 + -0.3
1,474,317 + -0.8
1,474,317 + -1.0
1,474,317 + +0.1
1,474,317 + +0.3
1,474,317 + -0.0
1,474,317 + -0.7
1,474,317 + -0.4
1,474,317 + +0.4
1,474,317 + +0.6
1,474,317 + +0.6
1,474,317 + +0.4
1,474,318 - -0.3
1,474,318 - -0.1
1,474,318 - -0.7
1,474,318 - -0.1
1,474,318 - +0.0
1,474,318 - -0.1
1,474,318 - +0.6
1,474,652 + ABIE51_RS06855 0.10 -0.0
1,474,653 - ABIE51_RS06855 0.10 -0.9
1,474,653 - ABIE51_RS06855 0.10 -0.0
1,474,677 - ABIE51_RS06855 0.14 +0.2
1,474,766 + ABIE51_RS06855 0.28 -1.0
1,474,766 + ABIE51_RS06855 0.28 +0.7
1,474,766 + ABIE51_RS06855 0.28 +0.6
1,474,766 + ABIE51_RS06855 0.28 -0.3
1,474,767 - ABIE51_RS06855 0.28 -0.3
1,474,767 - ABIE51_RS06855 0.28 -0.9
1,474,767 - ABIE51_RS06855 0.28 +0.3
1,474,775 + ABIE51_RS06855 0.29 -0.7
1,474,776 - ABIE51_RS06855 0.29 +0.5
1,474,776 - ABIE51_RS06855 0.29 +1.9
1,474,776 - ABIE51_RS06855 0.29 +0.6
1,474,889 + ABIE51_RS06855 0.47 +0.1
1,474,889 + ABIE51_RS06855 0.47 +0.1
1,474,889 + ABIE51_RS06855 0.47 -0.3
1,474,889 + ABIE51_RS06855 0.47 -0.9

Or see this region's nucleotide sequence