Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01825 and ABIE51_RS01830 are separated by 39 nucleotides ABIE51_RS01830 and ABIE51_RS01835 are separated by 2 nucleotides ABIE51_RS01835 and ABIE51_RS01840 are separated by 64 nucleotides
ABIE51_RS01825: ABIE51_RS01825 - SDR family oxidoreductase, at 406,124 to 406,876
_RS01825
ABIE51_RS01830: ABIE51_RS01830 - GNAT family N-acetyltransferase, at 406,916 to 407,371
_RS01830
ABIE51_RS01835: ABIE51_RS01835 - porphobilinogen synthase, at 407,374 to 408,366
_RS01835
ABIE51_RS01840: ABIE51_RS01840 - sulfate/molybdate ABC transporter ATP-binding protein, at 408,431 to 409,480
_RS01840
Position (kb) 407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.390 kb on + strand, within ABIE51_RS01825 at 406.402 kb on - strand, within ABIE51_RS01825 at 406.402 kb on - strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.791 kb on + strand, within ABIE51_RS01825 at 406.792 kb on - strand, within ABIE51_RS01825 at 406.938 kb on + strand at 406.939 kb on - strand at 406.939 kb on - strand at 406.939 kb on - strand at 406.980 kb on + strand, within ABIE51_RS01830 at 406.980 kb on + strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830 at 408.357 kb on - strand at 408.379 kb on + strand at 408.379 kb on + strand at 408.380 kb on - strand at 408.660 kb on + strand, within ABIE51_RS01840 at 408.786 kb on + strand, within ABIE51_RS01840 at 408.787 kb on - strand, within ABIE51_RS01840 at 408.787 kb on - strand, within ABIE51_RS01840 at 408.807 kb on + strand, within ABIE51_RS01840 at 408.807 kb on + strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 408.808 kb on - strand, within ABIE51_RS01840 at 409.084 kb on - strand, within ABIE51_RS01840 at 409.233 kb on + strand, within ABIE51_RS01840 at 409.234 kb on - strand, within ABIE51_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 406,390 + ABIE51_RS01825 0.35 +1.9 406,402 - ABIE51_RS01825 0.37 +0.5 406,402 - ABIE51_RS01825 0.37 +0.0 406,410 + ABIE51_RS01825 0.38 +0.1 406,410 + ABIE51_RS01825 0.38 -0.8 406,410 + ABIE51_RS01825 0.38 +0.9 406,411 - ABIE51_RS01825 0.38 -0.4 406,411 - ABIE51_RS01825 0.38 -0.5 406,411 - ABIE51_RS01825 0.38 -1.7 406,411 - ABIE51_RS01825 0.38 -0.1 406,791 + ABIE51_RS01825 0.89 -0.1 406,792 - ABIE51_RS01825 0.89 +1.5 406,938 + +0.0 406,939 - -0.4 406,939 - -0.1 406,939 - +0.3 406,980 + ABIE51_RS01830 0.14 -0.5 406,980 + ABIE51_RS01830 0.14 +0.2 406,981 - ABIE51_RS01830 0.14 +0.0 406,981 - ABIE51_RS01830 0.14 +0.1 406,981 - ABIE51_RS01830 0.14 +0.5 408,357 - -1.6 408,379 + +0.3 408,379 + -0.3 408,380 - +0.2 408,660 + ABIE51_RS01840 0.22 -1.1 408,786 + ABIE51_RS01840 0.34 -1.2 408,787 - ABIE51_RS01840 0.34 -1.8 408,787 - ABIE51_RS01840 0.34 +1.7 408,807 + ABIE51_RS01840 0.36 -1.0 408,807 + ABIE51_RS01840 0.36 -1.5 408,808 - ABIE51_RS01840 0.36 +0.0 408,808 - ABIE51_RS01840 0.36 -1.4 408,808 - ABIE51_RS01840 0.36 -1.4 409,084 - ABIE51_RS01840 0.62 +0.0 409,233 + ABIE51_RS01840 0.76 -1.0 409,234 - ABIE51_RS01840 0.76 -0.0
Or see this region's nucleotide sequence