Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20702 and SM_b20703 are separated by 51 nucleotides SM_b20703 and SM_b20704 are separated by 276 nucleotides SM_b20704 and SM_b20705 are separated by 314 nucleotides
SM_b20702: SM_b20702 - regulatory protein, at 1,502,959 to 1,504,623
_b20702
SM_b20703: SM_b20703 - hypothetical protein, at 1,504,675 to 1,505,184
_b20703
SM_b20704: SM_b20704 - glycogen synthase, at 1,505,461 to 1,506,921
_b20704
SM_b20705: SM_b20705 - hypothetical protein, at 1,507,236 to 1,508,147
_b20705
Position (kb)
1505
1506
1507 Strain fitness (log2 ratio)
-1
0
1
2 at 1504.645 kb on + strand at 1504.676 kb on + strand at 1504.676 kb on + strand at 1504.677 kb on - strand at 1504.685 kb on + strand at 1504.685 kb on + strand at 1504.685 kb on + strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1505.043 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.079 kb on - strand, within SM_b20703 at 1505.155 kb on + strand at 1505.156 kb on - strand at 1505.156 kb on - strand at 1505.214 kb on - strand at 1505.265 kb on + strand at 1505.352 kb on - strand at 1505.468 kb on + strand at 1505.468 kb on + strand at 1505.468 kb on + strand at 1505.525 kb on + strand at 1505.590 kb on + strand at 1505.590 kb on + strand at 1505.590 kb on + strand at 1505.725 kb on + strand, within SM_b20704 at 1505.725 kb on + strand, within SM_b20704 at 1505.725 kb on + strand, within SM_b20704 at 1505.726 kb on - strand, within SM_b20704 at 1505.726 kb on - strand, within SM_b20704 at 1505.746 kb on + strand, within SM_b20704 at 1505.746 kb on + strand, within SM_b20704 at 1505.747 kb on - strand, within SM_b20704 at 1505.770 kb on + strand, within SM_b20704 at 1505.899 kb on + strand, within SM_b20704 at 1505.900 kb on - strand, within SM_b20704 at 1505.909 kb on - strand, within SM_b20704 at 1505.909 kb on - strand, within SM_b20704 at 1505.983 kb on + strand, within SM_b20704 at 1505.984 kb on - strand, within SM_b20704 at 1506.016 kb on + strand, within SM_b20704 at 1506.109 kb on + strand, within SM_b20704 at 1506.110 kb on - strand, within SM_b20704 at 1506.204 kb on - strand, within SM_b20704 at 1506.215 kb on + strand, within SM_b20704 at 1506.215 kb on + strand, within SM_b20704 at 1506.254 kb on - strand, within SM_b20704 at 1506.254 kb on - strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.509 kb on + strand, within SM_b20704 at 1506.510 kb on - strand, within SM_b20704 at 1506.611 kb on - strand, within SM_b20704 at 1506.617 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.719 kb on + strand, within SM_b20704 at 1506.720 kb on - strand, within SM_b20704 at 1506.749 kb on + strand, within SM_b20704 at 1506.749 kb on + strand, within SM_b20704 at 1506.750 kb on - strand, within SM_b20704 at 1506.862 kb on + strand at 1507.097 kb on + strand at 1507.097 kb on + strand at 1507.098 kb on - strand at 1507.098 kb on - strand at 1507.305 kb on - strand at 1507.368 kb on + strand, within SM_b20705 at 1507.391 kb on + strand, within SM_b20705 at 1507.439 kb on - strand, within SM_b20705 at 1507.543 kb on - strand, within SM_b20705 at 1507.569 kb on + strand, within SM_b20705 at 1507.569 kb on + strand, within SM_b20705 at 1507.570 kb on - strand, within SM_b20705 at 1507.590 kb on + strand, within SM_b20705 at 1507.590 kb on + strand, within SM_b20705
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 1,504,645 + -0.2 1,504,676 + +0.3 1,504,676 + +0.8 1,504,677 - +0.6 1,504,685 + -0.3 1,504,685 + -0.3 1,504,685 + -0.6 1,504,686 - -0.6 1,504,686 - -0.3 1,504,686 - +0.3 1,504,686 - +0.1 1,504,686 - +1.0 1,505,043 + SM_b20703 0.72 -0.3 1,505,078 + SM_b20703 0.79 -0.2 1,505,078 + SM_b20703 0.79 -0.6 1,505,078 + SM_b20703 0.79 -0.1 1,505,079 - SM_b20703 0.79 +0.2 1,505,155 + -0.8 1,505,156 - +0.5 1,505,156 - +0.3 1,505,214 - -0.3 1,505,265 + -0.3 1,505,352 - +0.1 1,505,468 + +0.7 1,505,468 + -0.7 1,505,468 + +0.3 1,505,525 + -0.1 1,505,590 + -1.1 1,505,590 + +2.5 1,505,590 + +0.9 1,505,725 + SM_b20704 0.18 +0.4 1,505,725 + SM_b20704 0.18 -0.4 1,505,725 + SM_b20704 0.18 +0.1 1,505,726 - SM_b20704 0.18 +1.4 1,505,726 - SM_b20704 0.18 +0.1 1,505,746 + SM_b20704 0.20 +0.2 1,505,746 + SM_b20704 0.20 -0.2 1,505,747 - SM_b20704 0.20 +0.6 1,505,770 + SM_b20704 0.21 -0.4 1,505,899 + SM_b20704 0.30 +0.2 1,505,900 - SM_b20704 0.30 +0.2 1,505,909 - SM_b20704 0.31 +0.0 1,505,909 - SM_b20704 0.31 +0.8 1,505,983 + SM_b20704 0.36 +0.0 1,505,984 - SM_b20704 0.36 +0.3 1,506,016 + SM_b20704 0.38 -0.8 1,506,109 + SM_b20704 0.44 -0.8 1,506,110 - SM_b20704 0.44 +0.1 1,506,204 - SM_b20704 0.51 +0.1 1,506,215 + SM_b20704 0.52 +0.3 1,506,215 + SM_b20704 0.52 +0.1 1,506,254 - SM_b20704 0.54 -0.4 1,506,254 - SM_b20704 0.54 +0.0 1,506,509 + SM_b20704 0.72 +0.6 1,506,509 + SM_b20704 0.72 +0.6 1,506,509 + SM_b20704 0.72 +0.6 1,506,509 + SM_b20704 0.72 +0.2 1,506,509 + SM_b20704 0.72 +0.5 1,506,510 - SM_b20704 0.72 +0.1 1,506,611 - SM_b20704 0.79 +1.7 1,506,617 + SM_b20704 0.79 +0.8 1,506,719 + SM_b20704 0.86 -0.8 1,506,719 + SM_b20704 0.86 +0.3 1,506,719 + SM_b20704 0.86 +0.5 1,506,720 - SM_b20704 0.86 +1.0 1,506,749 + SM_b20704 0.88 +0.0 1,506,749 + SM_b20704 0.88 +1.3 1,506,750 - SM_b20704 0.88 +0.4 1,506,862 + -0.0 1,507,097 + -0.1 1,507,097 + +0.2 1,507,098 - +0.6 1,507,098 - -0.1 1,507,305 - -0.6 1,507,368 + SM_b20705 0.14 +1.6 1,507,391 + SM_b20705 0.17 -0.1 1,507,439 - SM_b20705 0.22 +0.2 1,507,543 - SM_b20705 0.34 +0.5 1,507,569 + SM_b20705 0.37 -0.1 1,507,569 + SM_b20705 0.37 +0.3 1,507,570 - SM_b20705 0.37 -0.4 1,507,590 + SM_b20705 0.39 +0.3 1,507,590 + SM_b20705 0.39 -0.6
Or see this region's nucleotide sequence