Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
RR42_RS37130: RR42_RS37130 - hypothetical protein, at 3,792,645 to 3,792,842
_RS37130
Position (kb)
3792
3793 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3791.712 kb on + strand at 3791.755 kb on - strand at 3791.806 kb on - strand at 3791.806 kb on - strand at 3791.806 kb on - strand at 3791.862 kb on + strand at 3791.863 kb on - strand at 3792.046 kb on + strand at 3792.046 kb on + strand at 3792.047 kb on - strand at 3792.100 kb on + strand at 3792.159 kb on + strand at 3792.160 kb on - strand at 3792.174 kb on - strand at 3792.205 kb on - strand at 3792.248 kb on + strand at 3792.249 kb on - strand at 3792.249 kb on - strand at 3792.249 kb on - strand at 3792.249 kb on - strand at 3792.255 kb on - strand at 3792.255 kb on - strand at 3792.393 kb on - strand at 3792.409 kb on - strand at 3792.431 kb on + strand at 3792.431 kb on + strand at 3792.432 kb on - strand at 3792.438 kb on + strand at 3792.439 kb on - strand at 3792.439 kb on - strand at 3792.439 kb on - strand at 3792.457 kb on - strand at 3792.494 kb on + strand at 3792.533 kb on + strand at 3792.534 kb on - strand at 3792.541 kb on + strand at 3792.541 kb on + strand at 3792.542 kb on - strand at 3792.542 kb on - strand at 3792.542 kb on - strand at 3792.582 kb on + strand at 3792.583 kb on - strand at 3792.651 kb on - strand at 3792.651 kb on - strand at 3792.651 kb on - strand at 3792.689 kb on + strand, within RR42_RS37130 at 3792.692 kb on - strand, within RR42_RS37130 at 3792.692 kb on - strand, within RR42_RS37130 at 3792.726 kb on - strand, within RR42_RS37130 at 3792.820 kb on + strand, within RR42_RS37130 at 3792.820 kb on + strand, within RR42_RS37130 at 3792.820 kb on + strand, within RR42_RS37130 at 3792.820 kb on + strand, within RR42_RS37130 at 3792.821 kb on - strand, within RR42_RS37130 at 3792.825 kb on - strand at 3792.853 kb on + strand at 3792.853 kb on + strand at 3792.853 kb on + strand at 3792.853 kb on + strand at 3792.854 kb on - strand at 3792.854 kb on - strand at 3792.854 kb on - strand at 3792.938 kb on + strand at 3792.938 kb on + strand at 3792.939 kb on - strand at 3792.995 kb on + strand at 3792.995 kb on + strand at 3793.088 kb on - strand at 3793.088 kb on - strand at 3793.175 kb on + strand at 3793.176 kb on - strand at 3793.217 kb on + strand at 3793.217 kb on + strand at 3793.217 kb on + strand at 3793.217 kb on + strand at 3793.217 kb on + strand at 3793.217 kb on + strand at 3793.217 kb on + strand at 3793.217 kb on + strand at 3793.217 kb on + strand at 3793.218 kb on - strand at 3793.289 kb on + strand at 3793.290 kb on - strand at 3793.290 kb on - strand at 3793.300 kb on + strand at 3793.300 kb on + strand at 3793.312 kb on - strand at 3793.423 kb on + strand at 3793.423 kb on + strand at 3793.423 kb on + strand at 3793.424 kb on - strand at 3793.424 kb on - strand at 3793.462 kb on - strand at 3793.529 kb on + strand at 3793.529 kb on + strand at 3793.559 kb on + strand at 3793.559 kb on + strand at 3793.559 kb on + strand at 3793.560 kb on - strand at 3793.560 kb on - strand at 3793.563 kb on + strand at 3793.563 kb on + strand at 3793.563 kb on + strand at 3793.563 kb on + strand at 3793.563 kb on + strand at 3793.563 kb on + strand at 3793.564 kb on - strand at 3793.622 kb on + strand at 3793.623 kb on - strand at 3793.623 kb on - strand at 3793.623 kb on - strand at 3793.623 kb on - strand at 3793.636 kb on - strand at 3793.646 kb on - strand at 3793.686 kb on + strand at 3793.686 kb on + strand at 3793.686 kb on + strand at 3793.687 kb on - strand at 3793.783 kb on + strand at 3793.784 kb on - strand at 3793.784 kb on - strand at 3793.784 kb on - strand at 3793.784 kb on - strand at 3793.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 3,791,712 + -0.0 3,791,755 - +0.1 3,791,806 - +0.1 3,791,806 - +0.4 3,791,806 - -0.8 3,791,862 + +0.5 3,791,863 - +0.3 3,792,046 + -0.3 3,792,046 + +0.8 3,792,047 - +0.2 3,792,100 + -2.5 3,792,159 + -0.4 3,792,160 - -0.1 3,792,174 - -0.2 3,792,205 - +0.7 3,792,248 + +1.5 3,792,249 - -0.7 3,792,249 - -0.3 3,792,249 - -1.0 3,792,249 - -1.1 3,792,255 - -0.7 3,792,255 - +0.2 3,792,393 - -0.5 3,792,409 - -0.3 3,792,431 + +0.1 3,792,431 + -1.9 3,792,432 - -0.6 3,792,438 + -0.7 3,792,439 - -0.3 3,792,439 - +1.3 3,792,439 - -0.2 3,792,457 - -1.2 3,792,494 + -0.0 3,792,533 + -1.5 3,792,534 - +0.9 3,792,541 + +1.1 3,792,541 + +1.0 3,792,542 - -0.7 3,792,542 - +0.8 3,792,542 - -1.2 3,792,582 + -0.1 3,792,583 - -1.9 3,792,651 - -0.3 3,792,651 - +0.0 3,792,651 - +0.2 3,792,689 + RR42_RS37130 0.22 +1.6 3,792,692 - RR42_RS37130 0.24 -0.7 3,792,692 - RR42_RS37130 0.24 -2.1 3,792,726 - RR42_RS37130 0.41 -1.4 3,792,820 + RR42_RS37130 0.88 -0.3 3,792,820 + RR42_RS37130 0.88 -0.9 3,792,820 + RR42_RS37130 0.88 -0.5 3,792,820 + RR42_RS37130 0.88 -0.7 3,792,821 - RR42_RS37130 0.89 -0.3 3,792,825 - -0.8 3,792,853 + +0.2 3,792,853 + +1.3 3,792,853 + +0.5 3,792,853 + +1.2 3,792,854 - -0.8 3,792,854 - -0.3 3,792,854 - +1.0 3,792,938 + +0.9 3,792,938 + -0.4 3,792,939 - +0.0 3,792,995 + +0.2 3,792,995 + -0.9 3,793,088 - +0.3 3,793,088 - -0.7 3,793,175 + +0.5 3,793,176 - +0.9 3,793,217 + +0.8 3,793,217 + -0.2 3,793,217 + +1.0 3,793,217 + -0.1 3,793,217 + +0.4 3,793,217 + -0.9 3,793,217 + +0.1 3,793,217 + -0.3 3,793,217 + +1.0 3,793,218 - -0.2 3,793,289 + -0.9 3,793,290 - -2.0 3,793,290 - -0.9 3,793,300 + -0.3 3,793,300 + -0.0 3,793,312 - -0.1 3,793,423 + -2.0 3,793,423 + -1.9 3,793,423 + -1.7 3,793,424 - -1.0 3,793,424 - +0.2 3,793,462 - -0.6 3,793,529 + +0.3 3,793,529 + +0.6 3,793,559 + +0.4 3,793,559 + -3.4 3,793,559 + +0.5 3,793,560 - -0.5 3,793,560 - -1.4 3,793,563 + +0.1 3,793,563 + +1.1 3,793,563 + -0.6 3,793,563 + +1.5 3,793,563 + +0.9 3,793,563 + -0.3 3,793,564 - -0.2 3,793,622 + +0.1 3,793,623 - -0.7 3,793,623 - -0.0 3,793,623 - +0.1 3,793,623 - -0.0 3,793,636 - +0.2 3,793,646 - +0.3 3,793,686 + +0.1 3,793,686 + -1.0 3,793,686 + -0.0 3,793,687 - +0.2 3,793,783 + -0.9 3,793,784 - +0.2 3,793,784 - +1.0 3,793,784 - -0.2 3,793,784 - -0.4 3,793,784 - +0.2
Or see this region's nucleotide sequence