Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36670 and RR42_RS36675 are separated by 135 nucleotides RR42_RS36675 and RR42_RS36680 overlap by 4 nucleotides RR42_RS36680 and RR42_RS36685 are separated by 27 nucleotides RR42_RS36685 and RR42_RS36690 overlap by 4 nucleotides
RR42_RS36670: RR42_RS36670 - sodium:sulfate symporter, at 3,683,195 to 3,684,676
_RS36670
RR42_RS36675: RR42_RS36675 - AraC family transcriptional regulator, at 3,684,812 to 3,685,612
_RS36675
RR42_RS36680: RR42_RS36680 - hypothetical protein, at 3,685,609 to 3,686,685
_RS36680
RR42_RS36685: RR42_RS36685 - MarR family transcriptional regulator, at 3,686,713 to 3,687,228
_RS36685
RR42_RS36690: RR42_RS36690 - DNA alkylation repair protein, at 3,687,225 to 3,688,010
_RS36690
Position (kb)
3685
3686
3687 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3684.667 kb on + strand at 3684.667 kb on + strand at 3684.716 kb on + strand at 3684.716 kb on + strand at 3684.716 kb on + strand at 3684.717 kb on - strand at 3684.717 kb on - strand at 3684.717 kb on - strand at 3684.717 kb on - strand at 3684.768 kb on - strand at 3684.827 kb on + strand at 3684.827 kb on + strand at 3684.827 kb on + strand at 3684.827 kb on + strand at 3684.828 kb on - strand at 3684.828 kb on - strand at 3684.828 kb on - strand at 3684.828 kb on - strand at 3685.079 kb on + strand, within RR42_RS36675 at 3685.079 kb on + strand, within RR42_RS36675 at 3685.079 kb on + strand, within RR42_RS36675 at 3685.079 kb on + strand, within RR42_RS36675 at 3685.079 kb on + strand, within RR42_RS36675 at 3685.080 kb on - strand, within RR42_RS36675 at 3685.206 kb on + strand, within RR42_RS36675 at 3685.206 kb on + strand, within RR42_RS36675 at 3685.207 kb on - strand, within RR42_RS36675 at 3685.289 kb on - strand, within RR42_RS36675 at 3685.289 kb on - strand, within RR42_RS36675 at 3685.964 kb on - strand, within RR42_RS36680 at 3685.964 kb on - strand, within RR42_RS36680 at 3685.964 kb on - strand, within RR42_RS36680 at 3686.236 kb on + strand, within RR42_RS36680 at 3686.444 kb on - strand, within RR42_RS36680 at 3686.509 kb on + strand, within RR42_RS36680 at 3686.518 kb on + strand, within RR42_RS36680 at 3686.931 kb on + strand, within RR42_RS36685 at 3686.931 kb on + strand, within RR42_RS36685 at 3686.931 kb on + strand, within RR42_RS36685 at 3686.931 kb on + strand, within RR42_RS36685 at 3686.932 kb on - strand, within RR42_RS36685 at 3687.170 kb on + strand, within RR42_RS36685 at 3687.171 kb on - strand, within RR42_RS36685 at 3687.171 kb on - strand, within RR42_RS36685
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 3,684,667 + -1.1 3,684,667 + -0.5 3,684,716 + -0.8 3,684,716 + +0.9 3,684,716 + -0.5 3,684,717 - +1.9 3,684,717 - +1.6 3,684,717 - +0.2 3,684,717 - +0.4 3,684,768 - -1.2 3,684,827 + -0.2 3,684,827 + -0.1 3,684,827 + +1.3 3,684,827 + +0.2 3,684,828 - +2.3 3,684,828 - -0.1 3,684,828 - -1.3 3,684,828 - +0.3 3,685,079 + RR42_RS36675 0.33 -2.1 3,685,079 + RR42_RS36675 0.33 +1.0 3,685,079 + RR42_RS36675 0.33 -2.7 3,685,079 + RR42_RS36675 0.33 -3.1 3,685,079 + RR42_RS36675 0.33 -0.3 3,685,080 - RR42_RS36675 0.33 -1.4 3,685,206 + RR42_RS36675 0.49 -1.4 3,685,206 + RR42_RS36675 0.49 +0.1 3,685,207 - RR42_RS36675 0.49 +1.9 3,685,289 - RR42_RS36675 0.60 -0.9 3,685,289 - RR42_RS36675 0.60 -0.0 3,685,964 - RR42_RS36680 0.33 -2.1 3,685,964 - RR42_RS36680 0.33 +0.3 3,685,964 - RR42_RS36680 0.33 -0.1 3,686,236 + RR42_RS36680 0.58 +1.1 3,686,444 - RR42_RS36680 0.78 +0.2 3,686,509 + RR42_RS36680 0.84 +0.6 3,686,518 + RR42_RS36680 0.84 -0.4 3,686,931 + RR42_RS36685 0.42 +0.5 3,686,931 + RR42_RS36685 0.42 -1.8 3,686,931 + RR42_RS36685 0.42 -0.3 3,686,931 + RR42_RS36685 0.42 -1.5 3,686,932 - RR42_RS36685 0.42 -0.5 3,687,170 + RR42_RS36685 0.89 -0.9 3,687,171 - RR42_RS36685 0.89 +0.7 3,687,171 - RR42_RS36685 0.89 +0.2
Or see this region's nucleotide sequence