Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36680

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36670 and RR42_RS36675 are separated by 135 nucleotidesRR42_RS36675 and RR42_RS36680 overlap by 4 nucleotidesRR42_RS36680 and RR42_RS36685 are separated by 27 nucleotidesRR42_RS36685 and RR42_RS36690 overlap by 4 nucleotides RR42_RS36670: RR42_RS36670 - sodium:sulfate symporter, at 3,683,195 to 3,684,676 _RS36670 RR42_RS36675: RR42_RS36675 - AraC family transcriptional regulator, at 3,684,812 to 3,685,612 _RS36675 RR42_RS36680: RR42_RS36680 - hypothetical protein, at 3,685,609 to 3,686,685 _RS36680 RR42_RS36685: RR42_RS36685 - MarR family transcriptional regulator, at 3,686,713 to 3,687,228 _RS36685 RR42_RS36690: RR42_RS36690 - DNA alkylation repair protein, at 3,687,225 to 3,688,010 _RS36690 Position (kb) 3685 3686 3687Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3684.667 kb on + strandat 3684.667 kb on + strandat 3684.716 kb on + strandat 3684.716 kb on + strandat 3684.716 kb on + strandat 3684.717 kb on - strandat 3684.717 kb on - strandat 3684.717 kb on - strandat 3684.717 kb on - strandat 3684.768 kb on - strandat 3684.827 kb on + strandat 3684.827 kb on + strandat 3684.827 kb on + strandat 3684.827 kb on + strandat 3684.828 kb on - strandat 3684.828 kb on - strandat 3684.828 kb on - strandat 3684.828 kb on - strandat 3685.079 kb on + strand, within RR42_RS36675at 3685.079 kb on + strand, within RR42_RS36675at 3685.079 kb on + strand, within RR42_RS36675at 3685.079 kb on + strand, within RR42_RS36675at 3685.079 kb on + strand, within RR42_RS36675at 3685.080 kb on - strand, within RR42_RS36675at 3685.206 kb on + strand, within RR42_RS36675at 3685.206 kb on + strand, within RR42_RS36675at 3685.207 kb on - strand, within RR42_RS36675at 3685.289 kb on - strand, within RR42_RS36675at 3685.289 kb on - strand, within RR42_RS36675at 3685.964 kb on - strand, within RR42_RS36680at 3685.964 kb on - strand, within RR42_RS36680at 3685.964 kb on - strand, within RR42_RS36680at 3686.236 kb on + strand, within RR42_RS36680at 3686.444 kb on - strand, within RR42_RS36680at 3686.509 kb on + strand, within RR42_RS36680at 3686.518 kb on + strand, within RR42_RS36680at 3686.931 kb on + strand, within RR42_RS36685at 3686.931 kb on + strand, within RR42_RS36685at 3686.931 kb on + strand, within RR42_RS36685at 3686.931 kb on + strand, within RR42_RS36685at 3686.932 kb on - strand, within RR42_RS36685at 3687.170 kb on + strand, within RR42_RS36685at 3687.171 kb on - strand, within RR42_RS36685at 3687.171 kb on - strand, within RR42_RS36685

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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3,684,667 + -1.1
3,684,667 + -0.5
3,684,716 + -0.8
3,684,716 + +0.9
3,684,716 + -0.5
3,684,717 - +1.9
3,684,717 - +1.6
3,684,717 - +0.2
3,684,717 - +0.4
3,684,768 - -1.2
3,684,827 + -0.2
3,684,827 + -0.1
3,684,827 + +1.3
3,684,827 + +0.2
3,684,828 - +2.3
3,684,828 - -0.1
3,684,828 - -1.3
3,684,828 - +0.3
3,685,079 + RR42_RS36675 0.33 -2.1
3,685,079 + RR42_RS36675 0.33 +1.0
3,685,079 + RR42_RS36675 0.33 -2.7
3,685,079 + RR42_RS36675 0.33 -3.1
3,685,079 + RR42_RS36675 0.33 -0.3
3,685,080 - RR42_RS36675 0.33 -1.4
3,685,206 + RR42_RS36675 0.49 -1.4
3,685,206 + RR42_RS36675 0.49 +0.1
3,685,207 - RR42_RS36675 0.49 +1.9
3,685,289 - RR42_RS36675 0.60 -0.9
3,685,289 - RR42_RS36675 0.60 -0.0
3,685,964 - RR42_RS36680 0.33 -2.1
3,685,964 - RR42_RS36680 0.33 +0.3
3,685,964 - RR42_RS36680 0.33 -0.1
3,686,236 + RR42_RS36680 0.58 +1.1
3,686,444 - RR42_RS36680 0.78 +0.2
3,686,509 + RR42_RS36680 0.84 +0.6
3,686,518 + RR42_RS36680 0.84 -0.4
3,686,931 + RR42_RS36685 0.42 +0.5
3,686,931 + RR42_RS36685 0.42 -1.8
3,686,931 + RR42_RS36685 0.42 -0.3
3,686,931 + RR42_RS36685 0.42 -1.5
3,686,932 - RR42_RS36685 0.42 -0.5
3,687,170 + RR42_RS36685 0.89 -0.9
3,687,171 - RR42_RS36685 0.89 +0.7
3,687,171 - RR42_RS36685 0.89 +0.2

Or see this region's nucleotide sequence