Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35875

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,495,771	+				+0.2
3,495,771	+				+0.4
3,495,772	-				+2.0
3,495,772	-				+2.1
3,495,772	-				+2.3
3,495,777	+				-3.7
3,495,777	+				-1.8
3,495,777	+				-0.2
3,495,777	+				-1.8
3,495,777	+				-0.0
3,495,778	-				+2.5
3,495,778	-				+3.3
3,495,778	-				+2.3
3,495,778	-				+2.3
3,495,778	-				+3.1
3,495,778	-				+2.5
3,495,778	-				+2.6
3,495,778	-				+2.6
3,495,778	-				+3.0
3,495,867	+				-2.7
3,495,867	+				-0.6
3,495,867	+				-1.3
3,495,867	+				-1.0
3,495,868	-				+2.9
3,495,868	-				+2.6
3,495,868	-				+2.8
3,495,868	-				+2.8
3,495,868	-				+2.8
3,495,868	-				+2.9
3,495,977	-				+3.0
3,495,977	-				+3.2
3,496,093	+				-2.0
3,496,094	-				+2.8
3,496,140	-				+1.6
3,496,266	+				-2.7
3,496,267	-				+2.9
3,496,346	-				+2.5
3,496,346	-				+2.1
3,496,389	+				+0.0
3,496,695	-				+0.2
3,496,763	+				+1.0
3,496,764	-				+1.0
3,496,880	+		RR42_RS35875	0.12	-0.5
3,496,922	+		RR42_RS35875	0.16	+0.8
3,496,922	+		RR42_RS35875	0.16	-3.5
3,496,923	-		RR42_RS35875	0.16	+0.6
3,496,923	-		RR42_RS35875	0.16	-2.1
3,496,923	-		RR42_RS35875	0.16	+0.8
3,496,979	+		RR42_RS35875	0.21	-1.2
3,496,979	+		RR42_RS35875	0.21	-2.5
3,496,979	+		RR42_RS35875	0.21	-0.5
3,496,980	-		RR42_RS35875	0.21	-1.8
3,497,081	+		RR42_RS35875	0.31	-1.1
3,497,081	+		RR42_RS35875	0.31	-1.3
3,497,082	-		RR42_RS35875	0.31	-1.3
3,497,082	-		RR42_RS35875	0.31	-0.2
3,497,114	+		RR42_RS35875	0.35	-1.7
3,497,171	+		RR42_RS35875	0.40	-1.5
3,497,171	+		RR42_RS35875	0.40	-2.5
3,497,171	+		RR42_RS35875	0.40	-0.9
3,497,172	-		RR42_RS35875	0.40	-0.8
3,497,172	-		RR42_RS35875	0.40	-0.2
3,497,172	-		RR42_RS35875	0.40	-2.1
3,497,172	-		RR42_RS35875	0.40	-0.2
3,497,258	+		RR42_RS35875	0.49	-1.4
3,497,259	-		RR42_RS35875	0.49	-1.8
3,497,259	-		RR42_RS35875	0.49	+0.2
3,497,334	-		RR42_RS35875	0.56	-0.5
3,497,379	+		RR42_RS35875	0.60	-0.3
3,497,379	+		RR42_RS35875	0.60	-1.8
3,497,478	+		RR42_RS35875	0.70	-0.4
3,497,478	+		RR42_RS35875	0.70	-0.6
3,497,486	+		RR42_RS35875	0.71	-2.9
3,497,486	+		RR42_RS35875	0.71	-0.1
3,497,487	-		RR42_RS35875	0.71	-3.1
3,497,742	+				-0.2
3,497,744	+				-0.6
3,497,744	+				-0.1
3,497,744	+				+0.2
3,497,744	+				-0.6
3,497,745	-				-0.7
3,497,782	-				-0.4
3,497,782	-				+0.5
3,497,782	-				+0.4
3,497,796	+				-1.7
3,497,796	+				-1.3
3,497,797	-				-0.8
3,497,797	-				+0.2
3,497,814	+				-1.7
3,497,815	-				-2.2
3,497,978	+				-1.2
3,497,978	+				-1.0
3,497,979	-				+0.4
3,497,984	+				+0.4
3,497,984	+				+0.9
3,497,984	+				+0.4
3,497,984	+				+1.2
3,497,984	+				+0.7
3,497,985	-				-0.3
3,497,985	-				-0.3
3,497,985	-				-0.6
3,497,985	-				+0.4
3,497,985	-				+0.2
3,498,113	+				+0.2
3,498,113	+				-0.4
3,498,114	-				+0.2
3,498,114	-				-0.1
3,498,114	-				+0.1
3,498,114	-				-0.9
3,498,168	+		RR42_RS35880	0.13	+1.1
3,498,169	-		RR42_RS35880	0.13	+0.6
3,498,251	+		RR42_RS35880	0.22	+0.7
3,498,251	+		RR42_RS35880	0.22	-0.8
3,498,386	+		RR42_RS35880	0.36	-1.8
3,498,387	-		RR42_RS35880	0.36	-0.7
3,498,750	-		RR42_RS35880	0.73	+0.8
3,498,756	-		RR42_RS35880	0.73	-1.6