Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35245

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS35240 and RR42_RS35245 are separated by 38 nucleotidesRR42_RS35245 and RR42_RS35250 are separated by 245 nucleotides RR42_RS35240: RR42_RS35240 - acyl-CoA dehydrogenase, at 3,359,315 to 3,360,454 _RS35240 RR42_RS35245: RR42_RS35245 - acyl-CoA dehydrogenase, at 3,360,493 to 3,361,677 _RS35245 RR42_RS35250: RR42_RS35250 - alpha/beta hydrolase, at 3,361,923 to 3,362,858 _RS35250 Position (kb) 3360 3361 3362Strain fitness (log2 ratio) -1 0 1at 3359.668 kb on - strand, within RR42_RS35240at 3359.869 kb on + strand, within RR42_RS35240at 3359.968 kb on + strand, within RR42_RS35240at 3360.268 kb on - strand, within RR42_RS35240at 3360.699 kb on - strand, within RR42_RS35245at 3360.701 kb on + strand, within RR42_RS35245at 3360.702 kb on - strand, within RR42_RS35245at 3360.755 kb on - strand, within RR42_RS35245at 3360.948 kb on - strand, within RR42_RS35245at 3361.179 kb on - strand, within RR42_RS35245at 3361.179 kb on - strand, within RR42_RS35245at 3361.190 kb on - strand, within RR42_RS35245at 3361.475 kb on + strand, within RR42_RS35245at 3361.645 kb on + strandat 3361.646 kb on - strandat 3361.729 kb on + strandat 3361.734 kb on - strandat 3361.734 kb on - strandat 3361.823 kb on + strandat 3361.824 kb on - strandat 3362.196 kb on + strand, within RR42_RS35250at 3362.196 kb on + strand, within RR42_RS35250

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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3,359,668 - RR42_RS35240 0.31 -0.2
3,359,869 + RR42_RS35240 0.49 +1.3
3,359,968 + RR42_RS35240 0.57 +1.3
3,360,268 - RR42_RS35240 0.84 +0.9
3,360,699 - RR42_RS35245 0.17 +0.3
3,360,701 + RR42_RS35245 0.18 +1.3
3,360,702 - RR42_RS35245 0.18 -1.5
3,360,755 - RR42_RS35245 0.22 -0.4
3,360,948 - RR42_RS35245 0.38 -0.3
3,361,179 - RR42_RS35245 0.58 -1.0
3,361,179 - RR42_RS35245 0.58 +1.6
3,361,190 - RR42_RS35245 0.59 -0.3
3,361,475 + RR42_RS35245 0.83 -0.1
3,361,645 + -0.6
3,361,646 - -0.3
3,361,729 + -0.2
3,361,734 - -0.1
3,361,734 - +0.0
3,361,823 + -1.0
3,361,824 - -0.6
3,362,196 + RR42_RS35250 0.29 +0.7
3,362,196 + RR42_RS35250 0.29 +0.1

Or see this region's nucleotide sequence