Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35075

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,320,785	+		RR42_RS35070	0.25	+0.5
3,320,941	+		RR42_RS35070	0.37	+0.5
3,320,941	+		RR42_RS35070	0.37	+0.0
3,320,941	+		RR42_RS35070	0.37	+0.8
3,320,941	+		RR42_RS35070	0.37	-1.5
3,320,941	+		RR42_RS35070	0.37	+0.6
3,320,942	-		RR42_RS35070	0.37	-0.7
3,320,942	-		RR42_RS35070	0.37	+0.6
3,320,942	-		RR42_RS35070	0.37	+0.5
3,320,942	-		RR42_RS35070	0.37	+0.3
3,320,942	-		RR42_RS35070	0.37	+0.4
3,320,942	-		RR42_RS35070	0.37	-0.9
3,321,214	+		RR42_RS35070	0.59	+1.2
3,321,215	-		RR42_RS35070	0.59	+0.3
3,321,215	-		RR42_RS35070	0.59	-0.1
3,321,268	+		RR42_RS35070	0.63	+0.0
3,321,269	-		RR42_RS35070	0.63	-1.3
3,321,455	-		RR42_RS35070	0.77	-2.3
3,321,572	+		RR42_RS35070	0.87	+0.1
3,321,677	+				+0.1
3,321,689	+				+0.3
3,321,689	+				+1.8
3,321,689	+				-0.9
3,321,690	-				-0.1
3,321,690	-				-1.5
3,321,690	-				+2.3
3,322,092	+		RR42_RS35075	0.43	-0.5
3,322,276	+		RR42_RS35075	0.66	-0.6
3,322,278	+		RR42_RS35075	0.66	-1.3
3,322,279	-		RR42_RS35075	0.66	-1.0
3,322,279	-		RR42_RS35075	0.66	+1.3
3,322,279	-		RR42_RS35075	0.66	-0.5
3,322,351	-		RR42_RS35075	0.75	+0.6
3,322,351	-		RR42_RS35075	0.75	-0.3
3,322,379	+		RR42_RS35075	0.79	+1.2
3,322,413	+		RR42_RS35075	0.83	-0.5
3,322,413	+		RR42_RS35075	0.83	-1.4
3,322,414	-		RR42_RS35075	0.83	-0.3
3,322,414	-		RR42_RS35075	0.83	-0.1
3,322,432	+		RR42_RS35075	0.86	-0.5
3,322,432	+		RR42_RS35075	0.86	-0.7
3,322,432	+		RR42_RS35075	0.86	+0.9
3,322,433	-		RR42_RS35075	0.86	-1.0
3,322,433	-		RR42_RS35075	0.86	+1.0
3,322,433	-		RR42_RS35075	0.86	+0.4
3,322,485	+				+1.3
3,322,485	+				+0.0
3,322,485	+				+0.5
3,322,486	-				+0.8
3,322,486	-				+0.1
3,322,588	+				-0.4
3,322,589	-				-0.8
3,322,589	-				-2.2
3,322,600	-				-1.3
3,322,600	-				-0.3
3,322,620	-				-0.3
3,322,620	-				-0.5
3,322,620	-				-1.3
3,322,635	+				+0.2
3,322,639	+				+0.7
3,322,639	+				+0.1
3,322,640	-				-1.5
3,322,640	-				-0.2
3,322,665	-				-0.9
3,322,665	-				+0.0
3,322,674	+				-0.8
3,322,674	+				+1.5
3,322,674	+				+1.0
3,322,674	+				+0.4
3,322,675	-				-1.1
3,322,675	-				-0.9
3,322,675	-				+0.3
3,322,675	-				-0.3
3,322,675	-				-0.6
3,322,704	+				-0.9
3,322,704	+				+0.2
3,322,704	+				+0.2
3,322,705	-				-1.6
3,322,705	-				+0.8
3,322,705	-				+0.1
3,322,800	+		RR42_RS35080	0.12	+0.7
3,322,800	+		RR42_RS35080	0.12	+0.3
3,322,800	+		RR42_RS35080	0.12	-1.2
3,322,800	+		RR42_RS35080	0.12	+0.0
3,322,801	-		RR42_RS35080	0.12	-1.6
3,322,801	-		RR42_RS35080	0.12	-1.7
3,322,927	-		RR42_RS35080	0.26	+0.1
3,322,941	+		RR42_RS35080	0.28	-0.2
3,322,941	+		RR42_RS35080	0.28	-0.8
3,322,941	+		RR42_RS35080	0.28	+1.9
3,322,941	+		RR42_RS35080	0.28	-1.7
3,322,942	-		RR42_RS35080	0.28	-1.0
3,322,942	-		RR42_RS35080	0.28	-0.4
3,322,942	-		RR42_RS35080	0.28	+0.0
3,322,944	+		RR42_RS35080	0.28	+0.4
3,322,944	+		RR42_RS35080	0.28	-0.8
3,322,944	+		RR42_RS35080	0.28	+0.0
3,322,944	+		RR42_RS35080	0.28	+0.7
3,322,944	+		RR42_RS35080	0.28	-0.2
3,322,945	-		RR42_RS35080	0.28	+0.4
3,322,945	-		RR42_RS35080	0.28	-0.3
3,322,945	-		RR42_RS35080	0.28	-1.1
3,322,945	-		RR42_RS35080	0.28	-0.8
3,322,945	-		RR42_RS35080	0.28	-0.3
3,322,945	-		RR42_RS35080	0.28	-1.3
3,322,945	-		RR42_RS35080	0.28	-0.3
3,322,953	+		RR42_RS35080	0.29	+0.5
3,323,030	-		RR42_RS35080	0.37	-0.9
3,323,030	-		RR42_RS35080	0.37	-0.3
3,323,030	-		RR42_RS35080	0.37	-0.3
3,323,101	+		RR42_RS35080	0.45	+0.5
3,323,181	+		RR42_RS35080	0.54	+0.0
3,323,190	+		RR42_RS35080	0.55	+0.5
3,323,190	+		RR42_RS35080	0.55	-1.5
3,323,190	+		RR42_RS35080	0.55	+0.2
3,323,190	+		RR42_RS35080	0.55	+0.4
3,323,191	-		RR42_RS35080	0.55	-0.1
3,323,191	-		RR42_RS35080	0.55	+0.9
3,323,191	-		RR42_RS35080	0.55	+0.2
3,323,191	-		RR42_RS35080	0.55	+0.0
3,323,247	+		RR42_RS35080	0.62	+0.3
3,323,247	+		RR42_RS35080	0.62	+0.6
3,323,248	-		RR42_RS35080	0.62	-1.6
3,323,248	-		RR42_RS35080	0.62	+0.3
3,323,288	-		RR42_RS35080	0.66	-0.7
3,323,289	+		RR42_RS35080	0.66	-0.3
3,323,289	+		RR42_RS35080	0.66	-0.6
3,323,290	-		RR42_RS35080	0.67	-0.1
3,323,290	-		RR42_RS35080	0.67	-0.4
3,323,290	-		RR42_RS35080	0.67	-0.3
3,323,290	-		RR42_RS35080	0.67	-0.4
3,323,496	+		RR42_RS35080	0.90	+0.0
3,323,497	-		RR42_RS35080	0.90	-1.1