Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35045

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,315,096	-		RR42_RS35040	0.15	-0.7
3,315,096	-		RR42_RS35040	0.15	-0.1
3,315,096	-		RR42_RS35040	0.15	-0.1
3,315,096	-		RR42_RS35040	0.15	-0.1
3,315,096	-		RR42_RS35040	0.15	-1.0
3,315,096	-		RR42_RS35040	0.15	-0.2
3,315,096	-		RR42_RS35040	0.15	-0.1
3,315,096	-		RR42_RS35040	0.15	-1.0
3,315,096	-		RR42_RS35040	0.15	+0.5
3,315,138	-		RR42_RS35040	0.20	-2.6
3,315,209	+		RR42_RS35040	0.29	+2.1
3,315,356	-		RR42_RS35040	0.46	+0.3
3,315,536	-		RR42_RS35040	0.68	-0.9
3,315,537	+		RR42_RS35040	0.68	+0.5
3,315,538	-		RR42_RS35040	0.68	+1.3
3,315,547	+		RR42_RS35040	0.70	+0.0
3,315,547	+		RR42_RS35040	0.70	+0.9
3,315,547	+		RR42_RS35040	0.70	-1.3
3,315,548	-		RR42_RS35040	0.70	-0.8
3,315,548	-		RR42_RS35040	0.70	-0.9
3,315,667	+		RR42_RS35040	0.84	-0.0
3,315,668	-		RR42_RS35040	0.84	-0.4
3,315,692	+		RR42_RS35040	0.87	-0.4
3,315,796	+				-0.4
3,315,797	-				-2.3
3,315,797	-				+0.2
3,315,797	-				-0.3
3,315,835	-				+1.3
3,315,845	+				-2.3
3,315,845	+				+0.3
3,315,922	-				+0.1
3,315,927	+				-1.0
3,315,927	+				+0.0
3,315,927	+				+0.5
3,315,927	+				-0.6
3,315,928	-				-0.7
3,315,928	-				+0.3
3,315,931	+				-0.6
3,315,931	+				-0.3
3,315,931	+				+0.4
3,315,931	+				-0.7
3,315,932	-				-1.4
3,315,932	-				+1.3
3,315,937	+				+0.3
3,315,937	+				-0.3
3,315,937	+				-0.4
3,315,937	+				+1.2
3,315,938	-				-0.5
3,315,938	-				-0.7
3,315,938	-				-1.0
3,315,938	-				-1.5
3,315,938	-				-1.1
3,315,938	-				-0.1
3,315,938	-				-0.8
3,315,944	-				-0.7
3,315,944	-				-1.4
3,315,944	-				+0.6
3,315,944	-				-0.4
3,315,944	-				-0.3
3,316,077	+		RR42_RS35045	0.25	-0.1
3,316,078	-		RR42_RS35045	0.25	-0.8
3,316,086	+		RR42_RS35045	0.27	-1.0
3,316,086	+		RR42_RS35045	0.27	-0.2
3,316,086	+		RR42_RS35045	0.27	+1.3
3,316,086	+		RR42_RS35045	0.27	-0.1
3,316,086	+		RR42_RS35045	0.27	+0.5
3,316,086	+		RR42_RS35045	0.27	+0.2
3,316,086	+		RR42_RS35045	0.27	+0.7
3,316,086	+		RR42_RS35045	0.27	+0.9
3,316,086	+		RR42_RS35045	0.27	-0.1
3,316,087	-		RR42_RS35045	0.27	+0.4
3,316,087	-		RR42_RS35045	0.27	+1.1
3,316,087	-		RR42_RS35045	0.27	+0.5
3,316,371	+		RR42_RS35045	0.80	+0.1
3,316,372	-		RR42_RS35045	0.81	+0.7
3,316,374	+		RR42_RS35045	0.81	+0.3
3,316,374	+		RR42_RS35045	0.81	+1.5
3,316,374	+		RR42_RS35045	0.81	+0.6
3,316,387	+		RR42_RS35045	0.83	-1.1
3,316,387	+		RR42_RS35045	0.83	+0.3
3,316,388	-		RR42_RS35045	0.84	+0.1
3,316,400	+		RR42_RS35045	0.86	-0.6
3,316,401	-		RR42_RS35045	0.86	-0.1
3,316,473	-				+0.7
3,316,473	-				+0.8
3,316,473	-				+0.3
3,316,473	-				+0.5
3,316,479	+				-1.3
3,316,479	+				+0.4
3,316,479	+				-0.1
3,316,480	-				-0.4
3,316,561	+		RR42_RS35050	0.22	-1.1
3,316,927	-				+0.6
3,316,927	-				-1.8
3,316,927	-				+0.1
3,316,974	+				+1.3
3,317,016	+				-0.8
3,317,016	+				+1.0
3,317,016	+				+0.1
3,317,017	-				+0.4
3,317,017	-				-1.8
3,317,017	-				-1.7
3,317,095	+		RR42_RS35055	0.27	-1.1
3,317,095	+		RR42_RS35055	0.27	-0.6
3,317,095	+		RR42_RS35055	0.27	-0.1
3,317,096	-		RR42_RS35055	0.28	-0.2
3,317,175	+		RR42_RS35055	0.55	-0.5
3,317,175	+		RR42_RS35055	0.55	-0.3
3,317,176	-		RR42_RS35055	0.55	-0.7
3,317,193	+		RR42_RS35055	0.61	-0.3
3,317,210	-		RR42_RS35055	0.67	-0.0
3,317,228	+		RR42_RS35055	0.73	+0.7
3,317,228	+		RR42_RS35055	0.73	-0.6
3,317,229	-		RR42_RS35055	0.74	-0.1
3,317,229	-		RR42_RS35055	0.74	-0.1
3,317,229	-		RR42_RS35055	0.74	-0.5
3,317,229	-		RR42_RS35055	0.74	-0.5
3,317,269	-		RR42_RS35055	0.87	+0.6
3,317,361	+				+0.1
3,317,378	+				+0.5
3,317,378	+				-0.1
3,317,378	+				-0.4
3,317,378	+				-0.9
3,317,425	+				-1.2
3,317,425	+				+0.9
3,317,426	-				-0.3
3,317,443	-				-0.0
3,317,443	-				-0.6