Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33975

Experiment: R2A with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS33970 and RR42_RS33975 are separated by 236 nucleotidesRR42_RS33975 and RR42_RS33980 are separated by 282 nucleotides RR42_RS33970: RR42_RS33970 - LysR family transcriptional regulator, at 3,049,364 to 3,050,263 _RS33970 RR42_RS33975: RR42_RS33975 - hypothetical protein, at 3,050,500 to 3,050,865 _RS33975 RR42_RS33980: RR42_RS33980 - hypothetical protein, at 3,051,148 to 3,051,423 _RS33980 Position (kb) 3050 3051Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3049.500 kb on + strand, within RR42_RS33970at 3049.500 kb on + strand, within RR42_RS33970at 3049.501 kb on - strand, within RR42_RS33970at 3049.893 kb on + strand, within RR42_RS33970at 3049.988 kb on - strand, within RR42_RS33970at 3050.191 kb on + strandat 3050.191 kb on + strandat 3050.191 kb on + strandat 3050.192 kb on - strandat 3050.192 kb on - strandat 3050.275 kb on + strandat 3050.317 kb on + strandat 3050.317 kb on + strandat 3050.317 kb on + strandat 3050.318 kb on - strandat 3050.322 kb on + strandat 3050.323 kb on - strandat 3050.323 kb on - strandat 3050.464 kb on + strandat 3050.464 kb on + strandat 3050.466 kb on + strandat 3050.466 kb on + strandat 3050.467 kb on - strandat 3050.467 kb on - strandat 3050.553 kb on + strand, within RR42_RS33975at 3050.554 kb on - strand, within RR42_RS33975at 3050.554 kb on - strand, within RR42_RS33975at 3050.554 kb on - strand, within RR42_RS33975at 3050.763 kb on + strand, within RR42_RS33975at 3050.763 kb on + strand, within RR42_RS33975at 3050.764 kb on - strand, within RR42_RS33975at 3050.904 kb on - strandat 3050.913 kb on + strandat 3050.913 kb on + strandat 3050.913 kb on + strandat 3050.913 kb on + strandat 3050.913 kb on + strandat 3050.914 kb on - strandat 3050.943 kb on - strandat 3050.972 kb on - strandat 3050.972 kb on - strandat 3051.024 kb on - strandat 3051.298 kb on + strand, within RR42_RS33980at 3051.298 kb on + strand, within RR42_RS33980at 3051.298 kb on + strand, within RR42_RS33980at 3051.298 kb on + strand, within RR42_RS33980at 3051.298 kb on + strand, within RR42_RS33980at 3051.299 kb on - strand, within RR42_RS33980at 3051.299 kb on - strand, within RR42_RS33980at 3051.339 kb on + strand, within RR42_RS33980at 3051.359 kb on + strand, within RR42_RS33980at 3051.511 kb on - strandat 3051.511 kb on - strandat 3051.738 kb on + strandat 3051.754 kb on + strandat 3051.754 kb on + strandat 3051.785 kb on - strandat 3051.800 kb on + strandat 3051.809 kb on - strandat 3051.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
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3,049,500 + RR42_RS33970 0.15 +1.7
3,049,500 + RR42_RS33970 0.15 +0.0
3,049,501 - RR42_RS33970 0.15 -0.6
3,049,893 + RR42_RS33970 0.59 +1.4
3,049,988 - RR42_RS33970 0.69 -0.4
3,050,191 + +0.7
3,050,191 + +1.3
3,050,191 + +0.3
3,050,192 - -3.5
3,050,192 - -0.9
3,050,275 + -0.8
3,050,317 + -0.5
3,050,317 + +0.9
3,050,317 + +2.3
3,050,318 - +2.4
3,050,322 + +0.7
3,050,323 - -0.5
3,050,323 - -2.5
3,050,464 + -0.2
3,050,464 + +0.1
3,050,466 + -3.8
3,050,466 + +0.7
3,050,467 - -3.2
3,050,467 - +1.1
3,050,553 + RR42_RS33975 0.14 -1.3
3,050,554 - RR42_RS33975 0.15 +1.9
3,050,554 - RR42_RS33975 0.15 +1.4
3,050,554 - RR42_RS33975 0.15 -0.1
3,050,763 + RR42_RS33975 0.72 -0.3
3,050,763 + RR42_RS33975 0.72 -0.3
3,050,764 - RR42_RS33975 0.72 +0.4
3,050,904 - +0.6
3,050,913 + +1.1
3,050,913 + -0.8
3,050,913 + -0.7
3,050,913 + +0.3
3,050,913 + -0.0
3,050,914 - +0.3
3,050,943 - +0.1
3,050,972 - -0.3
3,050,972 - -1.6
3,051,024 - -0.3
3,051,298 + RR42_RS33980 0.54 -0.8
3,051,298 + RR42_RS33980 0.54 -0.6
3,051,298 + RR42_RS33980 0.54 +0.2
3,051,298 + RR42_RS33980 0.54 -0.7
3,051,298 + RR42_RS33980 0.54 -0.3
3,051,299 - RR42_RS33980 0.55 +0.1
3,051,299 - RR42_RS33980 0.55 +0.3
3,051,339 + RR42_RS33980 0.69 -1.2
3,051,359 + RR42_RS33980 0.76 +0.3
3,051,511 - +0.9
3,051,511 - +0.6
3,051,738 + -1.8
3,051,754 + +0.2
3,051,754 + +0.3
3,051,785 - +0.3
3,051,800 + -2.2
3,051,809 - -0.2
3,051,832 - -0.1

Or see this region's nucleotide sequence