Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS33495 and RR42_RS33500 are separated by 143 nucleotides RR42_RS33500 and RR42_RS33505 are separated by 235 nucleotides RR42_RS33505 and RR42_RS33510 are separated by 63 nucleotides
RR42_RS33495: RR42_RS33495 - L-phenylalanine:H+ symporter AroP (from data) , at 2,929,938 to 2,931,335
_RS33495
RR42_RS33500: RR42_RS33500 - 4-hydroxyphenylpyruvate dioxygenase, at 2,931,479 to 2,932,552
_RS33500
RR42_RS33505: RR42_RS33505 - AsnC family transcriptional regulator, at 2,932,788 to 2,933,261
_RS33505
RR42_RS33510: RR42_RS33510 - permease, at 2,933,325 to 2,934,599
_RS33510
Position (kb)
2931
2932
2933 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2930.584 kb on + strand, within RR42_RS33495 at 2930.584 kb on + strand, within RR42_RS33495 at 2930.585 kb on - strand, within RR42_RS33495 at 2930.585 kb on - strand, within RR42_RS33495 at 2930.585 kb on - strand, within RR42_RS33495 at 2930.603 kb on - strand, within RR42_RS33495 at 2930.812 kb on + strand, within RR42_RS33495 at 2930.957 kb on + strand, within RR42_RS33495 at 2930.972 kb on - strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.980 kb on + strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2930.981 kb on - strand, within RR42_RS33495 at 2931.020 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.022 kb on + strand, within RR42_RS33495 at 2931.023 kb on - strand, within RR42_RS33495 at 2931.023 kb on - strand, within RR42_RS33495 at 2931.034 kb on + strand, within RR42_RS33495 at 2931.034 kb on + strand, within RR42_RS33495 at 2931.073 kb on + strand, within RR42_RS33495 at 2931.073 kb on + strand, within RR42_RS33495 at 2931.073 kb on + strand, within RR42_RS33495 at 2931.074 kb on - strand, within RR42_RS33495 at 2931.312 kb on - strand at 2931.312 kb on - strand at 2931.347 kb on + strand at 2931.456 kb on - strand at 2931.738 kb on + strand, within RR42_RS33500 at 2931.741 kb on + strand, within RR42_RS33500 at 2931.741 kb on + strand, within RR42_RS33500 at 2931.741 kb on + strand, within RR42_RS33500 at 2931.742 kb on - strand, within RR42_RS33500 at 2931.742 kb on - strand, within RR42_RS33500 at 2931.744 kb on + strand, within RR42_RS33500 at 2931.745 kb on - strand, within RR42_RS33500 at 2932.033 kb on - strand, within RR42_RS33500 at 2932.140 kb on + strand, within RR42_RS33500 at 2932.140 kb on + strand, within RR42_RS33500 at 2932.140 kb on + strand, within RR42_RS33500 at 2932.140 kb on + strand, within RR42_RS33500 at 2932.141 kb on - strand, within RR42_RS33500 at 2932.141 kb on - strand, within RR42_RS33500 at 2932.141 kb on - strand, within RR42_RS33500 at 2932.141 kb on - strand, within RR42_RS33500 at 2932.177 kb on - strand, within RR42_RS33500 at 2932.278 kb on + strand, within RR42_RS33500 at 2932.278 kb on + strand, within RR42_RS33500 at 2932.278 kb on + strand, within RR42_RS33500 at 2932.278 kb on + strand, within RR42_RS33500 at 2932.279 kb on - strand, within RR42_RS33500 at 2932.279 kb on - strand, within RR42_RS33500 at 2932.348 kb on - strand, within RR42_RS33500 at 2932.475 kb on + strand at 2932.476 kb on - strand at 2932.476 kb on - strand at 2932.476 kb on - strand at 2932.588 kb on + strand at 2932.588 kb on + strand at 2932.588 kb on + strand at 2932.588 kb on + strand at 2932.589 kb on - strand at 2932.589 kb on - strand at 2932.589 kb on - strand at 2932.591 kb on + strand at 2932.592 kb on - strand at 2932.592 kb on - strand at 2932.658 kb on + strand at 2932.674 kb on + strand at 2932.674 kb on + strand at 2932.674 kb on + strand at 2932.691 kb on + strand at 2932.691 kb on + strand at 2932.691 kb on + strand at 2932.692 kb on - strand at 2932.692 kb on - strand at 2932.693 kb on + strand at 2932.693 kb on + strand at 2932.694 kb on - strand at 2932.694 kb on - strand at 2932.804 kb on + strand at 2932.950 kb on + strand, within RR42_RS33505 at 2933.000 kb on + strand, within RR42_RS33505 at 2933.000 kb on + strand, within RR42_RS33505 at 2933.001 kb on - strand, within RR42_RS33505 at 2933.001 kb on - strand, within RR42_RS33505 at 2933.112 kb on + strand, within RR42_RS33505 at 2933.112 kb on + strand, within RR42_RS33505 at 2933.113 kb on - strand, within RR42_RS33505 at 2933.113 kb on - strand, within RR42_RS33505 at 2933.113 kb on - strand, within RR42_RS33505 at 2933.113 kb on - strand, within RR42_RS33505 at 2933.365 kb on + strand at 2933.365 kb on + strand at 2933.419 kb on + strand at 2933.420 kb on - strand at 2933.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 2,930,584 + RR42_RS33495 0.46 +0.4 2,930,584 + RR42_RS33495 0.46 +1.3 2,930,585 - RR42_RS33495 0.46 -1.5 2,930,585 - RR42_RS33495 0.46 -1.3 2,930,585 - RR42_RS33495 0.46 +0.5 2,930,603 - RR42_RS33495 0.48 +1.1 2,930,812 + RR42_RS33495 0.63 -0.2 2,930,957 + RR42_RS33495 0.73 +1.1 2,930,972 - RR42_RS33495 0.74 +0.6 2,930,980 + RR42_RS33495 0.75 +0.4 2,930,980 + RR42_RS33495 0.75 +0.5 2,930,980 + RR42_RS33495 0.75 +0.2 2,930,980 + RR42_RS33495 0.75 +0.3 2,930,980 + RR42_RS33495 0.75 +0.5 2,930,980 + RR42_RS33495 0.75 +0.9 2,930,980 + RR42_RS33495 0.75 -1.4 2,930,980 + RR42_RS33495 0.75 -0.0 2,930,981 - RR42_RS33495 0.75 -0.4 2,930,981 - RR42_RS33495 0.75 -1.9 2,930,981 - RR42_RS33495 0.75 +0.2 2,930,981 - RR42_RS33495 0.75 +0.0 2,930,981 - RR42_RS33495 0.75 +0.5 2,930,981 - RR42_RS33495 0.75 +1.1 2,930,981 - RR42_RS33495 0.75 +1.1 2,930,981 - RR42_RS33495 0.75 +0.7 2,930,981 - RR42_RS33495 0.75 +0.4 2,930,981 - RR42_RS33495 0.75 +1.5 2,930,981 - RR42_RS33495 0.75 -0.7 2,930,981 - RR42_RS33495 0.75 +0.6 2,930,981 - RR42_RS33495 0.75 +1.0 2,930,981 - RR42_RS33495 0.75 +1.8 2,930,981 - RR42_RS33495 0.75 +0.5 2,931,020 + RR42_RS33495 0.77 +1.1 2,931,022 + RR42_RS33495 0.78 -1.3 2,931,022 + RR42_RS33495 0.78 +0.7 2,931,022 + RR42_RS33495 0.78 +0.5 2,931,022 + RR42_RS33495 0.78 +1.3 2,931,022 + RR42_RS33495 0.78 +0.1 2,931,022 + RR42_RS33495 0.78 +0.6 2,931,022 + RR42_RS33495 0.78 -0.5 2,931,023 - RR42_RS33495 0.78 +0.5 2,931,023 - RR42_RS33495 0.78 -1.5 2,931,034 + RR42_RS33495 0.78 -1.6 2,931,034 + RR42_RS33495 0.78 +0.8 2,931,073 + RR42_RS33495 0.81 +0.6 2,931,073 + RR42_RS33495 0.81 -1.9 2,931,073 + RR42_RS33495 0.81 +0.9 2,931,074 - RR42_RS33495 0.81 +0.5 2,931,312 - -0.9 2,931,312 - +1.1 2,931,347 + +0.4 2,931,456 - -0.0 2,931,738 + RR42_RS33500 0.24 +2.9 2,931,741 + RR42_RS33500 0.24 +0.2 2,931,741 + RR42_RS33500 0.24 +0.9 2,931,741 + RR42_RS33500 0.24 +0.2 2,931,742 - RR42_RS33500 0.24 +1.2 2,931,742 - RR42_RS33500 0.24 +1.1 2,931,744 + RR42_RS33500 0.25 -0.0 2,931,745 - RR42_RS33500 0.25 +0.3 2,932,033 - RR42_RS33500 0.52 +0.1 2,932,140 + RR42_RS33500 0.62 +0.5 2,932,140 + RR42_RS33500 0.62 -1.1 2,932,140 + RR42_RS33500 0.62 +1.0 2,932,140 + RR42_RS33500 0.62 +1.3 2,932,141 - RR42_RS33500 0.62 -0.4 2,932,141 - RR42_RS33500 0.62 +0.9 2,932,141 - RR42_RS33500 0.62 +2.0 2,932,141 - RR42_RS33500 0.62 -0.3 2,932,177 - RR42_RS33500 0.65 +0.7 2,932,278 + RR42_RS33500 0.74 -0.7 2,932,278 + RR42_RS33500 0.74 -1.3 2,932,278 + RR42_RS33500 0.74 -0.9 2,932,278 + RR42_RS33500 0.74 -0.7 2,932,279 - RR42_RS33500 0.74 +1.2 2,932,279 - RR42_RS33500 0.74 -0.0 2,932,348 - RR42_RS33500 0.81 +1.8 2,932,475 + -2.2 2,932,476 - +1.3 2,932,476 - -0.9 2,932,476 - +0.4 2,932,588 + -0.4 2,932,588 + +0.6 2,932,588 + +0.1 2,932,588 + +0.1 2,932,589 - +0.7 2,932,589 - -0.2 2,932,589 - +0.7 2,932,591 + -0.4 2,932,592 - -0.9 2,932,592 - -1.9 2,932,658 + +0.7 2,932,674 + -2.2 2,932,674 + +0.0 2,932,674 + -0.4 2,932,691 + -0.1 2,932,691 + -0.0 2,932,691 + -0.1 2,932,692 - +0.7 2,932,692 - +0.1 2,932,693 + -0.1 2,932,693 + -1.2 2,932,694 - +0.0 2,932,694 - -0.0 2,932,804 + -0.7 2,932,950 + RR42_RS33505 0.34 +0.8 2,933,000 + RR42_RS33505 0.45 -0.6 2,933,000 + RR42_RS33505 0.45 -1.3 2,933,001 - RR42_RS33505 0.45 +0.6 2,933,001 - RR42_RS33505 0.45 +1.6 2,933,112 + RR42_RS33505 0.68 +1.1 2,933,112 + RR42_RS33505 0.68 -0.4 2,933,113 - RR42_RS33505 0.69 +0.5 2,933,113 - RR42_RS33505 0.69 +1.5 2,933,113 - RR42_RS33505 0.69 +0.8 2,933,113 - RR42_RS33505 0.69 -1.3 2,933,365 + -0.6 2,933,365 + +0.7 2,933,419 + +0.3 2,933,420 - +1.2 2,933,420 - -0.6
Or see this region's nucleotide sequence