Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33360

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,898,263	+				-0.2
2,898,263	+				+0.7
2,898,263	+				-0.0
2,898,264	-				-0.3
2,898,264	-				-0.7
2,898,264	-				+0.8
2,898,308	+				-0.0
2,898,308	+				-2.9
2,898,309	-				-0.0
2,898,309	-				-0.9
2,898,333	+				+1.3
2,898,333	+				-1.0
2,898,333	+				+0.5
2,898,333	+				-1.0
2,898,333	+				+2.3
2,898,334	-				-0.3
2,898,334	-				-0.5
2,898,373	+				-0.3
2,898,373	+				+0.9
2,898,373	+				-0.7
2,898,373	+				+0.3
2,898,373	+				+1.3
2,898,374	-				-1.0
2,898,374	-				-0.3
2,898,374	-				-1.0
2,898,374	-				-1.3
2,898,374	-				+0.9
2,898,374	-				-0.1
2,898,374	-				-0.2
2,898,374	-				+1.1
2,898,374	-				-0.1
2,898,381	-				-0.5
2,898,824	+		RR42_RS33355	0.54	-0.3
2,898,829	+		RR42_RS33355	0.55	+0.5
2,898,830	-		RR42_RS33355	0.55	+0.9
2,898,897	+		RR42_RS33355	0.66	-1.2
2,898,898	-		RR42_RS33355	0.66	-0.5
2,898,898	-		RR42_RS33355	0.66	+0.9
2,898,898	-		RR42_RS33355	0.66	-0.1
2,899,186	+				+0.9
2,899,187	-				+0.6
2,899,187	-				+0.5
2,899,187	-				-1.2
2,899,239	-				-1.3
2,899,239	-				-0.2
2,899,591	+		RR42_RS33360	0.56	+2.0
2,899,591	+		RR42_RS33360	0.56	+0.6
2,899,598	+		RR42_RS33360	0.57	-0.1
2,899,598	+		RR42_RS33360	0.57	-0.6
2,899,599	-		RR42_RS33360	0.57	-1.5
2,899,599	-		RR42_RS33360	0.57	-1.0
2,899,705	+		RR42_RS33360	0.74	+0.8
2,899,705	+		RR42_RS33360	0.74	+0.1
2,899,705	+		RR42_RS33360	0.74	-1.1
2,899,706	-		RR42_RS33360	0.74	-0.0
2,900,040	+				-0.2
2,900,040	+				+0.4
2,900,040	+				+0.4
2,900,041	-				-1.4
2,900,062	-				+0.5
2,900,070	+				+0.7
2,900,070	+				+0.2
2,900,158	+				+0.3
2,900,159	-				+0.7
2,900,159	-				-0.2
2,900,200	+				-0.4
2,900,200	+				+1.6
2,900,200	+				+0.3
2,900,201	-				+0.4
2,900,201	-				-0.1
2,900,279	+		RR42_RS33365	0.10	-2.0
2,900,280	-		RR42_RS33365	0.11	-0.0
2,900,280	-		RR42_RS33365	0.11	-1.5
2,900,369	+		RR42_RS33365	0.23	+0.6
2,900,369	+		RR42_RS33365	0.23	-1.2
2,900,369	+		RR42_RS33365	0.23	-0.2
2,900,369	+		RR42_RS33365	0.23	+0.8
2,900,369	+		RR42_RS33365	0.23	-0.3
2,900,369	+		RR42_RS33365	0.23	-1.5
2,900,369	+		RR42_RS33365	0.23	-0.0
2,900,370	-		RR42_RS33365	0.23	-0.9
2,900,370	-		RR42_RS33365	0.23	+0.5
2,900,370	-		RR42_RS33365	0.23	+0.2
2,900,370	-		RR42_RS33365	0.23	+0.1
2,900,468	+		RR42_RS33365	0.36	-0.2
2,900,469	-		RR42_RS33365	0.36	-1.7
2,900,514	-		RR42_RS33365	0.42	+0.1
2,900,514	-		RR42_RS33365	0.42	-1.0
2,900,586	+		RR42_RS33365	0.52	+0.7
2,900,586	+		RR42_RS33365	0.52	+1.1
2,900,586	+		RR42_RS33365	0.52	-0.2
2,900,586	+		RR42_RS33365	0.52	+1.0
2,900,586	+		RR42_RS33365	0.52	-1.8
2,900,586	+		RR42_RS33365	0.52	+0.2
2,900,587	-		RR42_RS33365	0.52	-0.8
2,900,587	-		RR42_RS33365	0.52	+0.0
2,900,587	-		RR42_RS33365	0.52	-0.4
2,900,587	-		RR42_RS33365	0.52	-1.7
2,900,587	-		RR42_RS33365	0.52	-0.3
2,900,587	-		RR42_RS33365	0.52	+0.3
2,900,587	-		RR42_RS33365	0.52	+0.1
2,900,587	-		RR42_RS33365	0.52	-0.0
2,900,609	+		RR42_RS33365	0.55	-2.2
2,900,610	-		RR42_RS33365	0.56	+1.5
2,900,762	+		RR42_RS33365	0.76	+0.6
2,900,790	+		RR42_RS33365	0.80	+0.8
2,900,799	+		RR42_RS33365	0.81	+0.7
2,900,800	-		RR42_RS33365	0.81	-1.8
2,900,805	+		RR42_RS33365	0.82	-0.1
2,900,805	+		RR42_RS33365	0.82	-0.5
2,900,806	-		RR42_RS33365	0.82	-0.7
2,900,850	+		RR42_RS33365	0.88	-0.0
2,900,851	-		RR42_RS33365	0.88	+1.8
2,900,851	-		RR42_RS33365	0.88	+0.0
2,900,851	-		RR42_RS33365	0.88	+0.0
2,900,851	-		RR42_RS33365	0.88	+0.9
2,900,851	-		RR42_RS33365	0.88	+0.1