Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33205

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,855,371	+		RR42_RS33195	0.61	-2.2
2,855,651	-		RR42_RS33195	0.81	-1.6
2,855,684	+		RR42_RS33195	0.84	-1.4
2,855,684	+		RR42_RS33195	0.84	-3.4
2,855,684	+		RR42_RS33195	0.84	-2.6
2,855,684	+		RR42_RS33195	0.84	-0.7
2,855,684	+		RR42_RS33195	0.84	-1.8
2,855,684	+		RR42_RS33195	0.84	-1.9
2,855,685	-		RR42_RS33195	0.84	-1.3
2,855,685	-		RR42_RS33195	0.84	-0.8
2,855,685	-		RR42_RS33195	0.84	-2.4
2,855,689	-		RR42_RS33195	0.84	-1.6
2,855,689	-		RR42_RS33195	0.84	-0.4
2,855,709	+		RR42_RS33195	0.85	-1.5
2,855,710	-		RR42_RS33195	0.85	-2.0
2,855,826	+				+0.6
2,855,827	-				-3.2
2,855,864	+				-0.5
2,855,865	-				-1.3
2,855,966	+				-1.5
2,855,966	+				-0.7
2,855,966	+				-1.8
2,855,967	-				-2.3
2,855,992	+		RR42_RS33200	0.13	-2.0
2,855,992	+		RR42_RS33200	0.13	-1.6
2,855,992	+		RR42_RS33200	0.13	+0.7
2,855,992	+		RR42_RS33200	0.13	-0.7
2,855,992	+		RR42_RS33200	0.13	+0.0
2,855,992	+		RR42_RS33200	0.13	+0.5
2,855,996	+		RR42_RS33200	0.14	+1.3
2,855,997	-		RR42_RS33200	0.14	-0.6
2,855,997	-		RR42_RS33200	0.14	-2.4
2,856,052	+		RR42_RS33200	0.29	+0.8
2,856,052	+		RR42_RS33200	0.29	-0.7
2,856,060	+		RR42_RS33200	0.31	-0.7
2,856,060	+		RR42_RS33200	0.31	-0.1
2,856,082	+		RR42_RS33200	0.37	+1.3
2,856,082	+		RR42_RS33200	0.37	-0.6
2,856,082	+		RR42_RS33200	0.37	-2.5
2,856,083	-		RR42_RS33200	0.37	-1.3
2,856,110	+		RR42_RS33200	0.44	-1.4
2,856,110	+		RR42_RS33200	0.44	-1.4
2,856,110	+		RR42_RS33200	0.44	-0.2
2,856,111	-		RR42_RS33200	0.45	-1.8
2,856,257	+		RR42_RS33200	0.83	-1.4
2,856,285	-				-2.6
2,856,285	-				-0.4
2,856,316	+				-0.5
2,856,316	+				+0.4
2,856,317	-				-1.0
2,856,317	-				-1.0
2,856,338	+				+0.5
2,856,338	+				-0.1
2,856,338	+				-0.3
2,856,370	+				-0.8
2,856,371	-				-0.4
2,856,419	+				-1.7
2,856,419	+				-0.2
2,856,419	+				-0.9
2,856,420	-				-0.5
2,856,420	-				-0.3
2,856,482	-				-2.5
2,856,482	-				-0.5
2,856,635	-		RR42_RS33205	0.20	+0.6
2,856,641	+		RR42_RS33205	0.21	-1.8
2,856,667	+		RR42_RS33205	0.23	+1.2
2,856,667	+		RR42_RS33205	0.23	+0.0
2,856,667	+		RR42_RS33205	0.23	+0.2
2,856,920	-		RR42_RS33205	0.40	-1.5
2,856,920	-		RR42_RS33205	0.40	-0.7
2,856,920	-		RR42_RS33205	0.40	-2.5
2,856,988	+		RR42_RS33205	0.45	-0.6
2,856,989	-		RR42_RS33205	0.45	-2.6
2,856,989	-		RR42_RS33205	0.45	-1.7
2,857,055	+		RR42_RS33205	0.50	+0.2
2,857,055	+		RR42_RS33205	0.50	-2.2
2,857,055	+		RR42_RS33205	0.50	-0.1
2,857,055	+		RR42_RS33205	0.50	-2.3
2,857,056	-		RR42_RS33205	0.50	-1.2
2,857,076	+		RR42_RS33205	0.51	-0.5
2,857,077	-		RR42_RS33205	0.51	-1.4
2,857,089	+		RR42_RS33205	0.52	-0.9
2,857,114	+		RR42_RS33205	0.54	+0.5
2,857,126	+		RR42_RS33205	0.55	-1.4
2,857,141	+		RR42_RS33205	0.56	-1.9
2,857,141	+		RR42_RS33205	0.56	-1.6
2,857,142	-		RR42_RS33205	0.56	-2.6
2,857,169	+		RR42_RS33205	0.58	-1.1
2,857,169	+		RR42_RS33205	0.58	-0.6
2,857,169	+		RR42_RS33205	0.58	-0.8
2,857,169	+		RR42_RS33205	0.58	-0.7
2,857,170	-		RR42_RS33205	0.58	-2.2
2,857,170	-		RR42_RS33205	0.58	-2.1
2,857,285	+		RR42_RS33205	0.66	+0.3
2,857,285	+		RR42_RS33205	0.66	-1.7
2,857,341	+		RR42_RS33205	0.70	-0.5
2,857,341	+		RR42_RS33205	0.70	-0.1
2,857,342	-		RR42_RS33205	0.70	-0.8
2,857,344	+		RR42_RS33205	0.70	-2.5
2,857,345	-		RR42_RS33205	0.70	-1.8
2,857,345	-		RR42_RS33205	0.70	-2.3
2,857,369	-		RR42_RS33205	0.72	-1.3
2,857,459	+		RR42_RS33205	0.78	-0.0
2,857,469	+		RR42_RS33205	0.79	-0.9
2,857,469	+		RR42_RS33205	0.79	-1.2
2,857,470	-		RR42_RS33205	0.79	-2.8
2,857,470	-		RR42_RS33205	0.79	-1.9
2,857,529	+		RR42_RS33205	0.83	-1.5
2,857,530	-		RR42_RS33205	0.83	-1.2
2,857,682	-				-1.8
2,857,685	-				-1.2
2,857,753	+				-0.8
2,857,754	-				+0.6
2,857,754	-				+0.3
2,857,764	-				-2.2
2,857,764	-				-1.8
2,857,780	+				-2.0
2,857,796	-				-1.0
2,857,796	-				-2.9
2,857,846	+				-0.5
2,857,879	-		RR42_RS33210	0.14	-2.4
2,857,943	+		RR42_RS33210	0.23	-2.5
2,858,089	+		RR42_RS33210	0.42	-2.4
2,858,096	-		RR42_RS33210	0.42	-2.9
2,858,098	-		RR42_RS33210	0.43	-3.3
2,858,125	+		RR42_RS33210	0.46	-1.7
2,858,126	-		RR42_RS33210	0.46	-3.6
2,858,267	-		RR42_RS33210	0.65	-1.5
2,858,358	+		RR42_RS33210	0.77	-0.7
2,858,359	-		RR42_RS33210	0.77	-2.4
2,858,359	-		RR42_RS33210	0.77	-0.7
2,858,475	-				-1.0
2,858,475	-				-1.5
2,858,545	-				-0.4
2,858,556	+				-2.4
2,858,610	-				-1.4
2,858,642	-				-3.4
2,858,681	+				-0.7
2,858,681	+				+1.3
2,858,681	+				-1.0
2,858,682	-				-0.6
2,858,730	-				+1.2