Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33190

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,851,620	-				+0.1
2,851,715	+		RR42_RS33185	0.16	-0.2
2,851,715	+		RR42_RS33185	0.16	+0.1
2,851,716	-		RR42_RS33185	0.17	-3.3
2,851,716	-		RR42_RS33185	0.17	-1.3
2,852,212	-		RR42_RS33185	0.69	+1.2
2,852,212	-		RR42_RS33185	0.69	+0.3
2,852,213	+		RR42_RS33185	0.69	-0.3
2,852,249	+		RR42_RS33185	0.73	-0.0
2,852,249	+		RR42_RS33185	0.73	-0.1
2,852,249	+		RR42_RS33185	0.73	-1.3
2,852,249	+		RR42_RS33185	0.73	+0.3
2,852,249	+		RR42_RS33185	0.73	+0.4
2,852,250	-		RR42_RS33185	0.73	-2.0
2,852,250	-		RR42_RS33185	0.73	-0.0
2,852,250	-		RR42_RS33185	0.73	+1.0
2,852,250	-		RR42_RS33185	0.73	-0.3
2,852,250	-		RR42_RS33185	0.73	+0.0
2,852,251	+		RR42_RS33185	0.73	-1.4
2,852,251	+		RR42_RS33185	0.73	-0.0
2,852,345	-		RR42_RS33185	0.83	-0.5
2,852,345	-		RR42_RS33185	0.83	+1.3
2,852,412	-				+0.1
2,852,560	+				-0.2
2,852,560	+				+0.2
2,852,561	-				-1.2
2,852,563	+				+0.3
2,852,563	+				+1.6
2,852,563	+				+0.1
2,852,598	+				+0.3
2,852,599	-				-0.5
2,852,599	-				-1.1
2,852,634	-				+0.7
2,852,634	-				-0.1
2,852,645	+				-2.0
2,852,702	+		RR42_RS33190	0.14	+0.3
2,852,702	+		RR42_RS33190	0.14	+0.4
2,852,702	+		RR42_RS33190	0.14	-0.2
2,852,702	+		RR42_RS33190	0.14	+0.3
2,852,703	-		RR42_RS33190	0.14	+0.4
2,852,703	-		RR42_RS33190	0.14	-1.6
2,852,703	-		RR42_RS33190	0.14	-0.2
2,852,703	-		RR42_RS33190	0.14	+0.6
2,852,703	-		RR42_RS33190	0.14	-0.8
2,852,703	-		RR42_RS33190	0.14	-0.9
2,852,714	+		RR42_RS33190	0.15	+0.4
2,852,714	+		RR42_RS33190	0.15	-0.2
2,852,714	+		RR42_RS33190	0.15	+0.1
2,852,714	+		RR42_RS33190	0.15	-0.3
2,852,715	-		RR42_RS33190	0.16	-1.3
2,852,763	+		RR42_RS33190	0.22	+0.2
2,852,763	+		RR42_RS33190	0.22	+0.1
2,852,763	+		RR42_RS33190	0.22	-1.5
2,852,764	-		RR42_RS33190	0.22	+0.8
2,852,764	-		RR42_RS33190	0.22	+0.5
2,852,764	-		RR42_RS33190	0.22	+1.0
2,852,777	+		RR42_RS33190	0.24	-0.6
2,852,777	+		RR42_RS33190	0.24	-0.2
2,852,777	+		RR42_RS33190	0.24	+0.9
2,852,778	-		RR42_RS33190	0.24	-0.5
2,852,778	-		RR42_RS33190	0.24	+0.2
2,852,778	-		RR42_RS33190	0.24	-1.0
2,852,812	+		RR42_RS33190	0.29	-0.4
2,852,813	-		RR42_RS33190	0.29	-2.0
2,852,920	+		RR42_RS33190	0.43	+0.2
2,852,920	+		RR42_RS33190	0.43	-0.6
2,852,920	+		RR42_RS33190	0.43	-1.3
2,852,921	-		RR42_RS33190	0.43	-0.5
2,853,046	+		RR42_RS33190	0.60	-0.5
2,853,046	+		RR42_RS33190	0.60	+0.3
2,853,047	-		RR42_RS33190	0.60	-0.3
2,853,047	-		RR42_RS33190	0.60	+6.1
2,853,058	+		RR42_RS33190	0.61	+0.3
2,853,058	+		RR42_RS33190	0.61	-0.6
2,853,059	-		RR42_RS33190	0.61	-0.3
2,853,201	+		RR42_RS33190	0.80	-0.6
2,853,310	+				+0.3
2,853,310	+				+0.1
2,853,310	+				-1.1
2,853,310	+				-1.0
2,853,311	-				-0.3
2,853,311	-				-0.8
2,853,311	-				+0.1
2,853,311	-				-0.1
2,853,311	-				+0.3
2,853,322	+				+1.6
2,853,322	+				-0.4
2,853,322	+				+0.5
2,853,322	+				+0.2
2,853,322	+				-0.3
2,853,323	-				+0.3
2,853,323	-				-0.3
2,853,323	-				+0.1
2,853,323	-				-1.0
2,853,323	-				-0.0
2,853,369	+				+0.1
2,853,381	-				-0.3
2,853,381	-				-0.8
2,853,387	+				-0.9
2,853,387	+				-2.2
2,853,387	+				-0.8
2,853,388	-				-1.0
2,853,388	-				+0.1
2,853,388	-				+0.3
2,853,389	+				+0.3
2,853,398	+				-0.7
2,853,398	+				-0.2
2,853,399	-				-0.7
2,853,399	-				-0.3
2,853,399	-				+0.3
2,853,425	+				-0.6
2,853,425	+				-0.5
2,853,425	+				-2.4
2,853,426	-				-0.8
2,853,426	-				-1.9
2,853,451	-				+0.7
2,853,451	-				+0.8
2,853,488	+				+0.8
2,853,488	+				+0.7
2,853,489	-				-2.6
2,853,489	-				+0.5
2,853,489	-				+0.3
2,853,489	-				+1.1
2,853,494	+				-0.4
2,853,609	+				-1.9
2,853,611	+				+0.3
2,853,611	+				+1.0
2,853,611	+				+1.8
2,853,611	+				-0.5
2,853,612	-				+0.6
2,853,612	-				-0.8
2,853,612	-				+1.5
2,853,638	+				+0.0
2,853,639	-				-1.6
2,853,729	+				-0.4
2,853,729	+				+0.1
2,853,730	-				-0.2
2,853,730	-				+2.4
2,853,730	-				+0.6
2,853,730	-				-0.9
2,853,730	-				-0.0
2,853,771	+				-1.0
2,853,772	-				+1.8
2,853,882	+				+0.2
2,853,882	+				+0.3
2,853,882	+				+1.3
2,853,882	+				+0.3
2,853,882	+				-0.7
2,853,882	+				-0.4
2,853,883	-				+1.3
2,853,883	-				+0.5
2,853,889	+				-1.1
2,853,890	-				-0.3
2,853,895	+				-0.5
2,853,975	+				-1.5
2,853,976	-				-0.7
2,853,976	-				+0.2
2,853,999	-				+0.2
2,854,006	+				-2.4
2,854,186	-				-1.9
2,854,224	-				-1.0