Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32245

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,619,872	+				-2.0
2,619,873	-				-1.6
2,619,873	-				-1.0
2,619,873	-				-1.6
2,619,909	+		RR42_RS32240	0.12	-3.1
2,619,930	-		RR42_RS32240	0.15	-0.8
2,619,930	-		RR42_RS32240	0.15	-1.3
2,619,930	-		RR42_RS32240	0.15	-2.5
2,619,930	-		RR42_RS32240	0.15	-1.3
2,619,968	+		RR42_RS32240	0.21	-1.3
2,619,968	+		RR42_RS32240	0.21	-2.3
2,619,968	+		RR42_RS32240	0.21	-0.6
2,619,968	+		RR42_RS32240	0.21	+0.3
2,619,969	-		RR42_RS32240	0.21	-1.5
2,619,969	-		RR42_RS32240	0.21	-3.1
2,620,092	-		RR42_RS32240	0.40	-1.0
2,620,092	-		RR42_RS32240	0.40	-1.7
2,620,140	-		RR42_RS32240	0.48	-2.6
2,620,140	-		RR42_RS32240	0.48	-3.5
2,620,140	-		RR42_RS32240	0.48	-1.4
2,620,140	-		RR42_RS32240	0.48	-1.9
2,620,140	-		RR42_RS32240	0.48	-2.9
2,620,172	+		RR42_RS32240	0.52	-3.2
2,620,173	-		RR42_RS32240	0.53	-2.6
2,620,618	+				-2.5
2,620,619	-				+0.1
2,620,620	+				-1.5
2,620,620	+				-1.3
2,620,620	+				-0.8
2,620,620	+				-1.9
2,620,620	+				-0.4
2,620,621	-				+2.3
2,620,621	-				-1.3
2,620,671	-				-0.8
2,620,673	-				-1.6
2,620,673	-				-1.6
2,620,673	-				-1.7
2,620,751	+				-0.3
2,620,751	+				-0.2
2,620,751	+				-1.5
2,620,751	+				-2.3
2,620,751	+				-0.2
2,620,751	+				-0.1
2,620,752	-				-1.0
2,620,752	-				-1.1
2,620,752	-				-1.1
2,620,752	-				-2.0
2,620,752	-				-1.2
2,620,752	-				-0.9
2,620,752	-				+0.2
2,620,752	-				-2.2
2,620,752	-				-1.8
2,620,752	-				-2.6
2,620,860	+				-1.9
2,620,860	+				-2.5
2,620,861	-				-0.2
2,620,861	-				-1.3
2,620,861	-				-2.4
2,620,861	-				-1.3
2,620,893	-				-0.7
2,621,124	+		RR42_RS32245	0.14	-2.1
2,621,229	-		RR42_RS32245	0.18	-1.0
2,621,442	+		RR42_RS32245	0.26	-3.2
2,621,442	+		RR42_RS32245	0.26	-3.3
2,621,442	+		RR42_RS32245	0.26	-0.9
2,621,443	-		RR42_RS32245	0.26	-0.8
2,621,443	-		RR42_RS32245	0.26	-1.8
2,621,533	+		RR42_RS32245	0.29	-3.1
2,621,534	-		RR42_RS32245	0.29	-1.0
2,621,534	-		RR42_RS32245	0.29	-0.7
2,621,821	-		RR42_RS32245	0.40	-1.5
2,621,844	-		RR42_RS32245	0.41	+0.1
2,621,952	+		RR42_RS32245	0.45	-2.7
2,621,952	+		RR42_RS32245	0.45	-2.5
2,621,952	+		RR42_RS32245	0.45	-0.3
2,621,952	+		RR42_RS32245	0.45	-2.0
2,621,953	-		RR42_RS32245	0.45	-2.8
2,621,953	-		RR42_RS32245	0.45	-3.3
2,621,953	-		RR42_RS32245	0.45	-1.3
2,621,953	-		RR42_RS32245	0.45	-2.7
2,622,875	+		RR42_RS32245	0.79	-1.6
2,622,876	-		RR42_RS32245	0.79	-2.3
2,622,876	-		RR42_RS32245	0.79	-1.8
2,622,876	-		RR42_RS32245	0.79	-1.4
2,623,173	+				-1.0
2,623,173	+				-2.7
2,623,173	+				-2.1
2,623,173	+				-1.0
2,623,174	-				-2.5
2,623,174	-				-0.9
2,623,174	-				-2.1
2,623,174	-				-1.7
2,623,174	-				-1.3
2,623,174	-				-1.9
2,623,174	-				-1.3
2,623,174	-				-1.6
2,623,176	+				+0.5
2,623,176	+				-3.3
2,623,176	+				-1.1
2,623,177	-				-3.4
2,623,177	-				-1.1
2,623,177	-				-0.9
2,623,177	-				-1.3
2,623,177	-				-1.2
2,623,177	-				-1.8
2,623,237	+				-2.5
2,623,238	-				+1.3
2,623,361	-				-0.7
2,623,444	+				-0.0
2,623,444	+				+0.2
2,623,445	-				-2.8
2,623,445	-				-0.4
2,623,445	-				-1.3
2,623,445	-				-2.0
2,623,616	+		RR42_RS32250	0.15	-1.5
2,623,616	+		RR42_RS32250	0.15	-2.4
2,623,617	-		RR42_RS32250	0.15	-2.6
2,623,617	-		RR42_RS32250	0.15	-1.0
2,623,692	-		RR42_RS32250	0.25	-1.9
2,623,718	-		RR42_RS32250	0.28	-1.8
2,623,718	-		RR42_RS32250	0.28	-1.9
2,623,898	+		RR42_RS32250	0.50	-1.0
2,623,952	+		RR42_RS32250	0.57	-1.3
2,623,952	+		RR42_RS32250	0.57	-1.7
2,623,952	+		RR42_RS32250	0.57	+1.3
2,623,952	+		RR42_RS32250	0.57	-1.5
2,623,952	+		RR42_RS32250	0.57	-2.5
2,623,952	+		RR42_RS32250	0.57	-1.0
2,623,953	-		RR42_RS32250	0.57	-2.0
2,623,953	-		RR42_RS32250	0.57	-1.1
2,623,953	-		RR42_RS32250	0.57	-0.3
2,624,090	-		RR42_RS32250	0.74	-1.5
2,624,090	-		RR42_RS32250	0.74	-0.8
2,624,090	-		RR42_RS32250	0.74	-2.0
2,624,090	-		RR42_RS32250	0.74	-1.8
2,624,090	-		RR42_RS32250	0.74	-1.6
2,624,093	+		RR42_RS32250	0.75	-0.6
2,624,093	+		RR42_RS32250	0.75	-1.4
2,624,093	+		RR42_RS32250	0.75	-1.7
2,624,093	+		RR42_RS32250	0.75	-4.0
2,624,093	+		RR42_RS32250	0.75	-1.7
2,624,093	+		RR42_RS32250	0.75	-1.4
2,624,093	+		RR42_RS32250	0.75	-1.5
2,624,094	-		RR42_RS32250	0.75	-1.3
2,624,114	+		RR42_RS32250	0.77	-1.7
2,624,115	-		RR42_RS32250	0.77	-1.2
2,624,132	+		RR42_RS32250	0.79	-1.5
2,624,132	+		RR42_RS32250	0.79	-2.1
2,624,133	-		RR42_RS32250	0.80	-0.7