Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32240

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,618,872	-		RR42_RS32235	0.38	-2.1
2,619,030	+		RR42_RS32235	0.51	-1.0
2,619,186	+		RR42_RS32235	0.65	-1.1
2,619,187	-		RR42_RS32235	0.65	-1.6
2,619,187	-		RR42_RS32235	0.65	+1.3
2,619,246	+		RR42_RS32235	0.70	-2.3
2,619,246	+		RR42_RS32235	0.70	+0.2
2,619,265	-		RR42_RS32235	0.72	-1.5
2,619,312	+		RR42_RS32235	0.76	-1.1
2,619,313	-		RR42_RS32235	0.76	+0.3
2,619,357	-		RR42_RS32235	0.79	-0.5
2,619,438	-		RR42_RS32235	0.86	-0.3
2,619,462	-		RR42_RS32235	0.88	-1.7
2,619,492	+				-0.8
2,619,493	-				-2.6
2,619,493	-				-0.8
2,619,759	-				-1.0
2,619,872	+				-2.0
2,619,873	-				-1.6
2,619,873	-				-1.0
2,619,873	-				-1.6
2,619,909	+		RR42_RS32240	0.12	-3.1
2,619,930	-		RR42_RS32240	0.15	-0.8
2,619,930	-		RR42_RS32240	0.15	-1.3
2,619,930	-		RR42_RS32240	0.15	-2.5
2,619,930	-		RR42_RS32240	0.15	-1.3
2,619,968	+		RR42_RS32240	0.21	-1.3
2,619,968	+		RR42_RS32240	0.21	-2.3
2,619,968	+		RR42_RS32240	0.21	-0.6
2,619,968	+		RR42_RS32240	0.21	+0.3
2,619,969	-		RR42_RS32240	0.21	-1.5
2,619,969	-		RR42_RS32240	0.21	-3.1
2,620,092	-		RR42_RS32240	0.40	-1.0
2,620,092	-		RR42_RS32240	0.40	-1.7
2,620,140	-		RR42_RS32240	0.48	-2.6
2,620,140	-		RR42_RS32240	0.48	-3.5
2,620,140	-		RR42_RS32240	0.48	-1.4
2,620,140	-		RR42_RS32240	0.48	-1.9
2,620,140	-		RR42_RS32240	0.48	-2.9
2,620,172	+		RR42_RS32240	0.52	-3.2
2,620,173	-		RR42_RS32240	0.53	-2.6
2,620,618	+				-2.5
2,620,619	-				+0.1
2,620,620	+				-1.5
2,620,620	+				-1.3
2,620,620	+				-0.8
2,620,620	+				-1.9
2,620,620	+				-0.4
2,620,621	-				+2.3
2,620,621	-				-1.3
2,620,671	-				-0.8
2,620,673	-				-1.6
2,620,673	-				-1.6
2,620,673	-				-1.7
2,620,751	+				-0.3
2,620,751	+				-0.2
2,620,751	+				-1.5
2,620,751	+				-2.3
2,620,751	+				-0.2
2,620,751	+				-0.1
2,620,752	-				-1.0
2,620,752	-				-1.1
2,620,752	-				-1.1
2,620,752	-				-2.0
2,620,752	-				-1.2
2,620,752	-				-0.9
2,620,752	-				+0.2
2,620,752	-				-2.2
2,620,752	-				-1.8
2,620,752	-				-2.6
2,620,860	+				-1.9
2,620,860	+				-2.5
2,620,861	-				-0.2
2,620,861	-				-1.3
2,620,861	-				-2.4
2,620,861	-				-1.3
2,620,893	-				-0.7
2,621,124	+		RR42_RS32245	0.14	-2.1
2,621,229	-		RR42_RS32245	0.18	-1.0
2,621,442	+		RR42_RS32245	0.26	-3.2
2,621,442	+		RR42_RS32245	0.26	-3.3
2,621,442	+		RR42_RS32245	0.26	-0.9
2,621,443	-		RR42_RS32245	0.26	-0.8
2,621,443	-		RR42_RS32245	0.26	-1.8