Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30665

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,255,027	+		RR42_RS30660	0.81	+0.8
2,255,168	+		RR42_RS30660	0.87	-0.9
2,255,467	+				-0.1
2,255,483	+				-1.6
2,255,522	+				-0.2
2,255,523	-				-0.2
2,255,523	-				-1.2
2,255,535	-				+0.8
2,255,697	+				-0.3
2,255,720	-				+1.4
2,255,720	-				+2.4
2,256,007	-		RR42_RS30665	0.12	+0.3
2,256,018	+		RR42_RS30665	0.12	-1.1
2,256,019	-		RR42_RS30665	0.12	+1.4
2,256,019	-		RR42_RS30665	0.12	+2.0
2,256,019	-		RR42_RS30665	0.12	+1.9
2,256,063	+		RR42_RS30665	0.14	+2.6
2,256,063	+		RR42_RS30665	0.14	-0.6
2,256,063	+		RR42_RS30665	0.14	+0.7
2,256,063	+		RR42_RS30665	0.14	-1.3
2,256,063	+		RR42_RS30665	0.14	+0.1
2,256,064	-		RR42_RS30665	0.14	+1.8
2,256,064	-		RR42_RS30665	0.14	+1.5
2,256,079	-		RR42_RS30665	0.15	+1.0
2,256,130	-		RR42_RS30665	0.17	+1.2
2,256,130	-		RR42_RS30665	0.17	+0.8
2,256,198	+		RR42_RS30665	0.21	+1.0
2,256,201	+		RR42_RS30665	0.21	+0.2
2,256,202	-		RR42_RS30665	0.21	+1.2
2,256,474	+		RR42_RS30665	0.34	+0.7
2,256,535	-		RR42_RS30665	0.37	+2.5
2,256,535	-		RR42_RS30665	0.37	+1.8
2,256,546	+		RR42_RS30665	0.37	+2.4
2,256,546	+		RR42_RS30665	0.37	-0.8
2,256,546	+		RR42_RS30665	0.37	-0.2
2,256,546	+		RR42_RS30665	0.37	+0.1
2,256,547	-		RR42_RS30665	0.37	+1.1
2,256,548	+		RR42_RS30665	0.37	+2.4
2,256,548	+		RR42_RS30665	0.37	-2.5
2,256,549	-		RR42_RS30665	0.37	+1.1
2,256,549	-		RR42_RS30665	0.37	+1.2
2,256,741	+		RR42_RS30665	0.46	+1.2
2,256,741	+		RR42_RS30665	0.46	+0.8
2,256,741	+		RR42_RS30665	0.46	+1.3
2,256,742	-		RR42_RS30665	0.46	+1.7
2,256,742	-		RR42_RS30665	0.46	+1.8
2,256,742	-		RR42_RS30665	0.46	+0.6
2,256,774	+		RR42_RS30665	0.48	-0.3
2,256,775	-		RR42_RS30665	0.48	+2.5
2,256,784	-		RR42_RS30665	0.48	+1.5
2,256,784	-		RR42_RS30665	0.48	+0.8
2,256,802	-		RR42_RS30665	0.49	-0.3
2,256,888	+		RR42_RS30665	0.53	+1.6
2,256,945	+		RR42_RS30665	0.56	+4.4
2,256,945	+		RR42_RS30665	0.56	+1.5
2,256,946	-		RR42_RS30665	0.56	+0.7
2,256,951	+		RR42_RS30665	0.56	+1.6
2,256,952	-		RR42_RS30665	0.56	+1.0
2,256,952	-		RR42_RS30665	0.56	+1.2
2,257,021	-		RR42_RS30665	0.60	+1.0
2,257,095	+		RR42_RS30665	0.63	+0.9
2,257,095	+		RR42_RS30665	0.63	+1.8
2,257,095	+		RR42_RS30665	0.63	+0.1
2,257,095	+		RR42_RS30665	0.63	-0.5
2,257,184	-		RR42_RS30665	0.67	+1.4
2,257,350	+		RR42_RS30665	0.75	+1.0
2,257,350	+		RR42_RS30665	0.75	+0.6
2,257,350	+		RR42_RS30665	0.75	+0.9
2,257,351	-		RR42_RS30665	0.75	+0.9
2,257,367	+		RR42_RS30665	0.76	+0.6
2,257,494	+		RR42_RS30665	0.82	+1.8
2,257,495	-		RR42_RS30665	0.82	+0.5
2,257,528	-		RR42_RS30665	0.84	+1.1
2,257,553	-		RR42_RS30665	0.85	+1.2
2,257,575	-		RR42_RS30665	0.86	+1.0
2,257,584	+		RR42_RS30665	0.86	+0.5
2,257,644	+		RR42_RS30665	0.89	+0.6
2,257,645	-		RR42_RS30665	0.89	+2.1
2,257,645	-		RR42_RS30665	0.89	+2.1
2,257,645	-		RR42_RS30665	0.89	+1.4
2,257,708	-				+1.8
2,257,767	+				-2.1
2,257,824	+				+1.1
2,257,825	-				-0.7
2,257,825	-				+0.8
2,257,825	-				+1.2
2,257,848	+				+0.2
2,257,849	-				+0.8
2,257,864	-				+1.3
2,257,891	-				+1.3
2,257,891	-				+1.1
2,257,982	+				+1.6
2,257,983	-				+0.2
2,257,983	-				-0.1
2,258,012	-				+1.2
2,258,012	-				+0.6
2,258,098	+		RR42_RS30670	0.11	-2.2
2,258,098	+		RR42_RS30670	0.11	-0.3
2,258,098	+		RR42_RS30670	0.11	+1.6
2,258,098	+		RR42_RS30670	0.11	-0.1
2,258,098	+		RR42_RS30670	0.11	-1.5
2,258,098	+		RR42_RS30670	0.11	+1.2
2,258,098	+		RR42_RS30670	0.11	+0.2
2,258,098	+		RR42_RS30670	0.11	+0.2
2,258,099	-		RR42_RS30670	0.11	-1.2
2,258,099	-		RR42_RS30670	0.11	-0.1
2,258,099	-		RR42_RS30670	0.11	-0.1
2,258,099	-		RR42_RS30670	0.11	-0.8
2,258,099	-		RR42_RS30670	0.11	-0.3
2,258,099	-		RR42_RS30670	0.11	+0.7
2,258,099	-		RR42_RS30670	0.11	+2.2
2,258,102	+		RR42_RS30670	0.11	-0.2
2,258,103	-		RR42_RS30670	0.11	+0.1
2,258,156	-		RR42_RS30670	0.15	-0.6
2,258,197	+		RR42_RS30670	0.18	+0.5
2,258,256	+		RR42_RS30670	0.22	-1.0
2,258,256	+		RR42_RS30670	0.22	-0.2
2,258,257	-		RR42_RS30670	0.22	-0.3
2,258,257	-		RR42_RS30670	0.22	+1.2
2,258,257	-		RR42_RS30670	0.22	+1.2
2,258,260	+		RR42_RS30670	0.22	+0.2
2,258,314	+		RR42_RS30670	0.26	+0.6
2,258,315	-		RR42_RS30670	0.26	-1.1
2,258,377	+		RR42_RS30670	0.30	+0.7
2,258,377	+		RR42_RS30670	0.30	+0.2
2,258,389	+		RR42_RS30670	0.31	+0.0
2,258,390	-		RR42_RS30670	0.31	-0.6
2,258,390	-		RR42_RS30670	0.31	+1.2
2,258,390	-		RR42_RS30670	0.31	-0.6
2,258,809	+		RR42_RS30670	0.60	-0.4
2,258,809	+		RR42_RS30670	0.60	+0.7