Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30215

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,153,254	-		RR42_RS30210	0.55	+0.3
2,153,254	-		RR42_RS30210	0.55	-0.3
2,153,314	+		RR42_RS30210	0.62	+0.2
2,153,314	+		RR42_RS30210	0.62	+0.9
2,153,354	+		RR42_RS30210	0.66	+1.3
2,153,354	+		RR42_RS30210	0.66	-2.6
2,153,476	+		RR42_RS30210	0.80	+1.3
2,153,729	+				+1.0
2,153,730	-				-0.1
2,153,893	+				+1.9
2,153,893	+				-0.3
2,153,893	+				+0.3
2,153,897	+				+0.0
2,153,897	+				+0.4
2,153,897	+				+1.2
2,153,897	+				-0.8
2,153,898	-				+0.0
2,153,898	-				-0.5
2,153,900	+				-0.1
2,153,935	+				-1.3
2,153,936	-				-1.5
2,153,936	-				-1.1
2,154,070	-				+0.8
2,154,092	+				+0.7
2,154,093	-				+0.7
2,154,132	-				+0.5
2,154,217	+				+0.5
2,154,217	+				+0.3
2,154,232	+				+0.3
2,154,232	+				-0.3
2,154,250	+				-0.3
2,154,328	+		RR42_RS30215	0.15	-0.1
2,154,328	+		RR42_RS30215	0.15	-0.6
2,154,329	-		RR42_RS30215	0.15	-0.2
2,154,357	+		RR42_RS30215	0.17	-0.6
2,154,367	+		RR42_RS30215	0.18	+1.3
2,154,368	-		RR42_RS30215	0.18	-0.0
2,154,495	-		RR42_RS30215	0.28	+0.6
2,154,622	-		RR42_RS30215	0.38	+1.3
2,154,630	+		RR42_RS30215	0.38	+0.9
2,154,631	-		RR42_RS30215	0.39	-0.5
2,154,664	-		RR42_RS30215	0.41	-0.3
2,154,670	+		RR42_RS30215	0.42	-0.6
2,154,671	-		RR42_RS30215	0.42	+1.4
2,154,671	-		RR42_RS30215	0.42	-1.2
2,154,671	-		RR42_RS30215	0.42	+0.5
2,154,671	-		RR42_RS30215	0.42	+0.3
2,154,671	-		RR42_RS30215	0.42	-0.8
2,154,671	-		RR42_RS30215	0.42	+0.5
2,154,672	+		RR42_RS30215	0.42	+1.3
2,154,672	+		RR42_RS30215	0.42	-0.3
2,154,672	+		RR42_RS30215	0.42	-0.7
2,154,673	-		RR42_RS30215	0.42	-0.5
2,154,940	+		RR42_RS30215	0.62	-2.3
2,154,940	+		RR42_RS30215	0.62	-1.0
2,154,940	+		RR42_RS30215	0.62	+0.5
2,155,227	-		RR42_RS30215	0.84	+0.7
2,155,267	+		RR42_RS30215	0.88	+0.3
2,155,267	+		RR42_RS30215	0.88	-0.8
2,155,267	+		RR42_RS30215	0.88	+0.5
2,155,269	+		RR42_RS30215	0.88	+0.1
2,155,327	+				+0.4
2,155,328	-				+0.2
2,155,360	+				+0.3
2,155,361	-				-1.9
2,155,361	-				-0.1
2,155,427	-				-0.1
2,155,435	+				+0.3
2,155,436	-				-0.8
2,155,436	-				-0.8
2,155,436	-				+0.8
2,155,622	-				+0.1
2,155,663	+				+0.7
2,155,719	+		RR42_RS30220	0.13	+0.7
2,155,720	-		RR42_RS30220	0.13	-0.9
2,156,080	+		RR42_RS30220	0.44	+0.4
2,156,080	+		RR42_RS30220	0.44	+0.7
2,156,081	-		RR42_RS30220	0.44	-0.2
2,156,081	-		RR42_RS30220	0.44	+0.6
2,156,081	-		RR42_RS30220	0.44	+1.3
2,156,081	-		RR42_RS30220	0.44	-1.9
2,156,081	-		RR42_RS30220	0.44	+0.2
2,156,081	-		RR42_RS30220	0.44	-0.8
2,156,081	-		RR42_RS30220	0.44	-1.1
2,156,081	-		RR42_RS30220	0.44	-0.5
2,156,182	+		RR42_RS30220	0.53	-1.9
2,156,183	-		RR42_RS30220	0.53	-0.3
2,156,288	-		RR42_RS30220	0.62	-0.1
2,156,289	+		RR42_RS30220	0.62	-1.5
2,156,311	+		RR42_RS30220	0.64	-0.7
2,156,395	+		RR42_RS30220	0.71	+0.2