Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28950

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,852,451	+		RR42_RS28945	0.12	-0.4
1,852,451	+		RR42_RS28945	0.12	-0.8
1,852,451	+		RR42_RS28945	0.12	-0.6
1,852,451	+		RR42_RS28945	0.12	+0.1
1,852,451	+		RR42_RS28945	0.12	+0.2
1,852,452	-		RR42_RS28945	0.13	+0.9
1,852,452	-		RR42_RS28945	0.13	+1.2
1,852,452	-		RR42_RS28945	0.13	-1.6
1,852,452	-		RR42_RS28945	0.13	+0.9
1,852,452	-		RR42_RS28945	0.13	+0.5
1,852,452	-		RR42_RS28945	0.13	+0.4
1,852,474	-		RR42_RS28945	0.15	-1.1
1,852,481	+		RR42_RS28945	0.16	+0.7
1,852,482	-		RR42_RS28945	0.16	+0.2
1,852,490	-		RR42_RS28945	0.17	+0.4
1,852,636	+		RR42_RS28945	0.35	-0.7
1,852,637	-		RR42_RS28945	0.35	+1.1
1,852,652	+		RR42_RS28945	0.37	-0.0
1,852,937	+		RR42_RS28945	0.71	+0.9
1,852,938	-		RR42_RS28945	0.71	-0.3
1,852,946	-				-0.3
1,852,965	+		RR42_RS28945	0.74	-0.2
1,852,998	-		RR42_RS28945	0.78	+0.2
1,853,132	+				+0.7
1,853,132	+				+1.0
1,853,132	+				+0.6
1,853,132	+				-0.1
1,853,132	+				-2.3
1,853,132	+				+1.2
1,853,132	+				+0.8
1,853,133	-				+0.2
1,853,133	-				-2.1
1,853,133	-				+0.5
1,853,133	-				+1.2
1,853,133	-				+0.4
1,853,133	-				-1.1
1,853,133	-				-0.4
1,853,133	-				+0.5
1,853,133	-				+0.1
1,853,133	-				+0.5
1,853,153	+				+1.0
1,853,154	-				-0.4
1,853,169	+				+0.5
1,853,169	+				+0.1
1,853,169	+				-0.8
1,853,169	+				+1.9
1,853,169	+				-0.5
1,853,169	+				+0.4
1,853,169	+				+1.7
1,853,169	+				+0.1
1,853,170	-				+0.6
1,853,170	-				-0.8
1,853,170	-				+0.8
1,853,170	-				+1.0
1,853,207	+				+0.2
1,853,207	+				+1.4
1,853,207	+				-0.8
1,853,207	+				+0.5
1,853,208	-				-0.6
1,853,208	-				-0.4
1,853,280	+				+1.0
1,853,280	+				+0.4
1,853,414	-				-0.5
1,853,476	+				+0.0
1,853,476	+				+0.9
1,853,477	-				-0.1
1,853,547	+		RR42_RS28950	0.11	+0.5
1,853,738	-		RR42_RS28950	0.27	-1.9
1,853,842	+		RR42_RS28950	0.36	-1.3
1,853,842	+		RR42_RS28950	0.36	-0.4
1,853,843	-		RR42_RS28950	0.36	-0.1
1,853,843	-		RR42_RS28950	0.36	-1.5
1,854,232	+		RR42_RS28950	0.68	+0.4
1,854,233	-		RR42_RS28950	0.68	+1.2
1,854,308	+		RR42_RS28950	0.74	-0.7
1,854,308	+		RR42_RS28950	0.74	+0.7
1,854,318	+		RR42_RS28950	0.75	-0.1
1,854,318	+		RR42_RS28950	0.75	+0.7
1,854,364	+		RR42_RS28950	0.79	+0.7
1,854,364	+		RR42_RS28950	0.79	+0.6
1,854,365	-		RR42_RS28950	0.79	+0.4
1,854,365	-		RR42_RS28950	0.79	-0.5
1,854,421	-		RR42_RS28950	0.84	+1.0
1,854,421	-		RR42_RS28950	0.84	-0.6
1,854,421	-		RR42_RS28950	0.84	-0.3
1,854,421	-		RR42_RS28950	0.84	+0.5
1,854,434	+		RR42_RS28950	0.85	+0.1
1,854,435	-		RR42_RS28950	0.85	-0.3
1,854,435	-		RR42_RS28950	0.85	-0.1
1,854,474	+		RR42_RS28950	0.88	+0.7
1,854,475	-		RR42_RS28950	0.88	+2.8
1,854,475	-		RR42_RS28950	0.88	-1.3
1,854,475	-		RR42_RS28950	0.88	+0.0
1,854,570	+				+0.9
1,854,614	+				-1.9
1,854,614	+				+1.1
1,854,615	-				+0.4
1,854,615	-				-0.6
1,854,615	-				+0.4
1,854,615	-				-0.9
1,854,615	-				-4.1
1,854,624	+				-0.1
1,854,625	-				+0.4
1,854,660	+				+1.2
1,854,661	-				-0.3
1,854,800	+				-0.6
1,854,801	-				+0.1
1,854,834	-				+0.3
1,854,999	-				-1.7
1,854,999	-				+0.4
1,854,999	-				+0.6
1,855,141	+				-1.4
1,855,141	+				-2.4
1,855,142	-				-1.0
1,855,142	-				+0.3
1,855,142	-				+0.7
1,855,153	+				+0.1
1,855,212	-				+0.3
1,855,212	-				-0.7
1,855,231	-				-0.7
1,855,231	-				-0.1
1,855,231	-				-0.3
1,855,245	-				+0.3
1,855,245	-				-0.1
1,855,320	+		RR42_RS28955	0.34	-0.2
1,855,321	-		RR42_RS28955	0.34	-0.5
1,855,321	-		RR42_RS28955	0.34	-0.3
1,855,398	+		RR42_RS28955	0.61	+0.0
1,855,398	+		RR42_RS28955	0.61	-1.0
1,855,416	+		RR42_RS28955	0.68	-0.2
1,855,417	-		RR42_RS28955	0.68	+2.8
1,855,505	-				+0.3
1,855,505	-				+0.0
1,855,559	+				-0.7
1,855,560	-				-0.0