Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28635

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,779,480	+		RR42_RS28630	0.33	+1.0
1,779,481	-		RR42_RS28630	0.33	+0.0
1,779,481	-		RR42_RS28630	0.33	+0.2
1,779,537	+		RR42_RS28630	0.38	-0.1
1,779,538	-		RR42_RS28630	0.38	-0.6
1,779,832	+		RR42_RS28630	0.66	+1.1
1,779,832	+		RR42_RS28630	0.66	-1.1
1,779,832	+		RR42_RS28630	0.66	+0.4
1,780,109	+				+3.0
1,780,254	+				+0.1
1,780,266	+				+0.8
1,780,267	-				-1.3
1,780,327	-				-0.3
1,780,342	+				+0.5
1,780,342	+				+1.1
1,780,342	+				-0.6
1,780,342	+				+1.1
1,780,343	-				-0.5
1,780,451	+				-1.1
1,780,554	+		RR42_RS28635	0.14	+2.5
1,780,555	-		RR42_RS28635	0.14	-1.0
1,780,555	-		RR42_RS28635	0.14	+1.2
1,780,889	+		RR42_RS28635	0.48	-1.3
1,780,889	+		RR42_RS28635	0.48	-0.3
1,780,889	+		RR42_RS28635	0.48	-0.6
1,780,889	+		RR42_RS28635	0.48	-0.2
1,780,890	-		RR42_RS28635	0.48	-0.2
1,780,890	-		RR42_RS28635	0.48	+0.8
1,780,993	+		RR42_RS28635	0.58	+0.4
1,780,993	+		RR42_RS28635	0.58	+1.8
1,780,993	+		RR42_RS28635	0.58	+1.3
1,780,993	+		RR42_RS28635	0.58	+1.2
1,780,995	+		RR42_RS28635	0.58	-0.2
1,780,995	+		RR42_RS28635	0.58	-0.9
1,780,996	-		RR42_RS28635	0.58	+0.2
1,780,996	-		RR42_RS28635	0.58	+0.4
1,781,049	+		RR42_RS28635	0.64	-1.3
1,781,049	+		RR42_RS28635	0.64	+0.7
1,781,050	-		RR42_RS28635	0.64	-0.6
1,781,363	+				+0.4
1,781,819	+				+0.7
1,781,819	+				-0.8
1,781,819	+				-1.6
1,781,819	+				+0.1
1,781,820	-				-1.2
1,781,894	+				+0.2
1,781,894	+				-0.8
1,781,894	+				-1.5
1,781,894	+				-0.6
1,781,895	-				-0.0
1,781,895	-				+0.3
1,781,897	+				+0.2
1,781,897	+				-0.2
1,781,897	+				-0.9
1,781,898	-				+1.6
1,781,898	-				+1.8
1,781,898	-				-0.1
1,781,898	-				-1.0
1,781,898	-				-1.2
1,781,898	-				+0.8
1,782,066	+				-2.3
1,782,066	+				-1.7
1,782,067	-				-0.6
1,782,067	-				-0.3
1,782,252	+		RR42_RS28645	0.28	+0.2
1,782,253	-		RR42_RS28645	0.28	+0.1
1,782,253	-		RR42_RS28645	0.28	+1.4