Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28345 and RR42_RS28350 are separated by 38 nucleotides RR42_RS28350 and RR42_RS28355 are separated by 2 nucleotides
RR42_RS28345: RR42_RS28345 - ABC transporter substrate-binding protein, at 1,720,144 to 1,721,127
_RS28345
RR42_RS28350: RR42_RS28350 - phthalate 4,5-dioxygenase, at 1,721,166 to 1,722,404
_RS28350
RR42_RS28355: RR42_RS28355 - amidohydrolase, at 1,722,407 to 1,723,411
_RS28355
Position (kb) 1721
1722
1723 Strain fitness (log2 ratio) -1
0
1 at 1720.568 kb on + strand, within RR42_RS28345 at 1720.568 kb on + strand, within RR42_RS28345 at 1720.569 kb on - strand, within RR42_RS28345 at 1720.719 kb on + strand, within RR42_RS28345 at 1720.719 kb on + strand, within RR42_RS28345 at 1720.857 kb on - strand at 1720.857 kb on - strand, within RR42_RS28345 at 1720.857 kb on - strand, within RR42_RS28345 at 1721.058 kb on - strand at 1721.117 kb on + strand at 1721.139 kb on + strand at 1721.546 kb on + strand, within RR42_RS28350 at 1721.665 kb on + strand, within RR42_RS28350 at 1721.698 kb on + strand, within RR42_RS28350 at 1721.746 kb on + strand, within RR42_RS28350 at 1721.747 kb on - strand, within RR42_RS28350 at 1722.244 kb on + strand, within RR42_RS28350 at 1722.245 kb on - strand, within RR42_RS28350 at 1722.307 kb on - strand at 1722.645 kb on + strand, within RR42_RS28355 at 1722.646 kb on - strand, within RR42_RS28355 at 1722.789 kb on + strand, within RR42_RS28355 at 1722.859 kb on + strand, within RR42_RS28355 at 1722.861 kb on + strand, within RR42_RS28355 at 1722.861 kb on + strand, within RR42_RS28355 at 1722.862 kb on - strand, within RR42_RS28355 at 1722.933 kb on + strand, within RR42_RS28355 at 1722.942 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.086 kb on + strand, within RR42_RS28355 at 1723.087 kb on - strand, within RR42_RS28355 at 1723.087 kb on - strand, within RR42_RS28355 at 1723.343 kb on + strand at 1723.343 kb on + strand at 1723.344 kb on - strand at 1723.359 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 1,720,568 + RR42_RS28345 0.43 -0.4 1,720,568 + RR42_RS28345 0.43 +0.3 1,720,569 - RR42_RS28345 0.43 +0.0 1,720,719 + RR42_RS28345 0.58 +1.7 1,720,719 + RR42_RS28345 0.58 +0.5 1,720,857 - +1.3 1,720,857 - RR42_RS28345 0.72 -1.3 1,720,857 - RR42_RS28345 0.72 -0.4 1,721,058 - -0.1 1,721,117 + +0.6 1,721,139 + +0.3 1,721,546 + RR42_RS28350 0.31 -0.3 1,721,665 + RR42_RS28350 0.40 -0.2 1,721,698 + RR42_RS28350 0.43 +0.6 1,721,746 + RR42_RS28350 0.47 -1.2 1,721,747 - RR42_RS28350 0.47 +0.5 1,722,244 + RR42_RS28350 0.87 +0.5 1,722,245 - RR42_RS28350 0.87 +0.3 1,722,307 - +0.3 1,722,645 + RR42_RS28355 0.24 -0.8 1,722,646 - RR42_RS28355 0.24 -0.5 1,722,789 + RR42_RS28355 0.38 +0.1 1,722,859 + RR42_RS28355 0.45 -1.0 1,722,861 + RR42_RS28355 0.45 +0.3 1,722,861 + RR42_RS28355 0.45 -0.4 1,722,862 - RR42_RS28355 0.45 -0.5 1,722,933 + RR42_RS28355 0.52 +0.1 1,722,942 + RR42_RS28355 0.53 +0.8 1,723,086 + RR42_RS28355 0.68 -1.7 1,723,086 + RR42_RS28355 0.68 -0.2 1,723,086 + RR42_RS28355 0.68 +0.5 1,723,086 + RR42_RS28355 0.68 +1.0 1,723,087 - RR42_RS28355 0.68 +0.1 1,723,087 - RR42_RS28355 0.68 -0.2 1,723,343 + -1.3 1,723,343 + +0.9 1,723,344 - +0.5 1,723,359 + -0.5
Or see this region's nucleotide sequence