Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25610

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
1,088,899	+		RR42_RS25605	0.29	-0.3
1,088,935	+		RR42_RS25605	0.32	-0.8
1,089,457	+		RR42_RS25605	0.80	-0.3
1,089,457	+		RR42_RS25605	0.80	-0.3
1,089,547	+		RR42_RS25605	0.88	-0.1
1,089,550	+		RR42_RS25605	0.88	-0.3
1,089,550	+		RR42_RS25605	0.88	-1.0
1,089,551	-		RR42_RS25605	0.88	+0.5
1,089,630	+				+0.2
1,089,652	+				+0.2
1,089,827	+				-0.9
1,089,827	+				-0.1
1,089,828	-				+0.3
1,089,828	-				-1.3
1,089,828	-				+0.4
1,089,828	-				+1.3
1,089,828	-				-0.7
1,089,828	-				+0.5
1,089,828	-				-1.1
1,089,828	-				+0.5
1,089,830	+				+1.3
1,089,831	-				-0.7
1,089,875	+				-0.2
1,089,882	-				-1.3
1,089,909	-				-1.3
1,089,909	-				+0.6
1,089,947	+		RR42_RS25610	0.14	+0.5
1,089,947	+		RR42_RS25610	0.14	+0.6
1,089,998	-		RR42_RS25610	0.20	+0.2
1,090,025	+		RR42_RS25610	0.23	+0.1
1,090,031	+		RR42_RS25610	0.24	-0.9
1,090,031	+		RR42_RS25610	0.24	+0.5
1,090,031	+		RR42_RS25610	0.24	+0.5
1,090,061	+		RR42_RS25610	0.28	+1.3
1,090,197	-		RR42_RS25610	0.44	-0.2
1,090,197	-		RR42_RS25610	0.44	+0.5
1,090,197	-		RR42_RS25610	0.44	-2.9
1,090,197	-		RR42_RS25610	0.44	-1.6
1,090,294	+		RR42_RS25610	0.55	-0.4
1,090,294	+		RR42_RS25610	0.55	+1.2
1,090,294	+		RR42_RS25610	0.55	-1.5
1,090,450	-		RR42_RS25610	0.74	+0.6
1,090,673	+				-2.5
1,090,673	+				-1.3
1,090,673	+				-0.2
1,090,674	-				-1.2
1,090,674	-				+1.0
1,090,757	-				-2.4
1,090,758	+				+0.3
1,090,758	+				-0.9
1,090,758	+				-1.7
1,090,769	+				+2.9
1,090,781	+				-0.6
1,090,782	-				-2.1
1,090,866	+		RR42_RS25615	0.11	-0.1
1,090,866	+		RR42_RS25615	0.11	+0.7
1,090,866	+		RR42_RS25615	0.11	+0.8
1,090,867	-		RR42_RS25615	0.11	-0.1
1,090,944	-		RR42_RS25615	0.24	+0.7
1,091,055	-		RR42_RS25615	0.43	+0.5
1,091,100	+		RR42_RS25615	0.51	+0.1
1,091,212	+		RR42_RS25615	0.70	+0.4
1,091,381	+				+1.3
1,091,382	-				+1.3
1,091,382	-				+0.8