Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24545 and RR42_RS24550 are separated by 714 nucleotides
RR42_RS24545: RR42_RS24545 - hypothetical protein, at 837,567 to 839,207
_RS24545
RR42_RS24550: RR42_RS24550 - hypothetical protein, at 839,922 to 840,104
_RS24550
Position (kb) 837
838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 836.568 kb on + strand at 836.569 kb on - strand at 836.569 kb on - strand at 836.620 kb on + strand at 836.620 kb on + strand at 836.673 kb on + strand at 836.730 kb on + strand at 836.732 kb on + strand at 836.733 kb on - strand at 836.941 kb on - strand at 837.161 kb on + strand at 837.161 kb on + strand at 837.162 kb on - strand at 837.179 kb on + strand at 837.179 kb on + strand at 837.179 kb on + strand at 837.180 kb on - strand at 837.180 kb on - strand at 837.183 kb on + strand at 837.183 kb on + strand at 837.183 kb on + strand at 837.184 kb on - strand at 837.184 kb on - strand at 837.184 kb on - strand at 837.187 kb on + strand at 837.293 kb on - strand at 837.293 kb on - strand at 837.305 kb on + strand at 837.306 kb on - strand at 837.306 kb on - strand at 837.306 kb on - strand at 837.339 kb on - strand at 837.369 kb on - strand at 837.405 kb on - strand at 837.408 kb on + strand at 837.408 kb on + strand at 837.409 kb on - strand at 837.450 kb on + strand at 837.450 kb on + strand at 837.529 kb on + strand at 837.653 kb on - strand at 837.745 kb on + strand, within RR42_RS24545 at 837.746 kb on - strand, within RR42_RS24545 at 837.746 kb on - strand, within RR42_RS24545 at 837.751 kb on - strand, within RR42_RS24545 at 837.871 kb on - strand, within RR42_RS24545 at 837.910 kb on + strand, within RR42_RS24545 at 837.911 kb on - strand, within RR42_RS24545 at 837.994 kb on + strand, within RR42_RS24545 at 837.994 kb on + strand, within RR42_RS24545 at 838.064 kb on - strand, within RR42_RS24545 at 838.182 kb on - strand, within RR42_RS24545 at 838.223 kb on - strand, within RR42_RS24545 at 838.223 kb on - strand, within RR42_RS24545 at 838.356 kb on - strand, within RR42_RS24545 at 838.442 kb on - strand, within RR42_RS24545 at 838.442 kb on - strand, within RR42_RS24545 at 838.442 kb on - strand, within RR42_RS24545 at 838.444 kb on + strand, within RR42_RS24545 at 838.444 kb on + strand, within RR42_RS24545 at 838.781 kb on - strand, within RR42_RS24545 at 838.792 kb on + strand, within RR42_RS24545 at 838.792 kb on + strand, within RR42_RS24545 at 838.792 kb on + strand, within RR42_RS24545 at 838.808 kb on + strand, within RR42_RS24545 at 838.811 kb on - strand, within RR42_RS24545 at 838.811 kb on - strand, within RR42_RS24545 at 838.811 kb on - strand, within RR42_RS24545 at 838.888 kb on + strand, within RR42_RS24545 at 838.889 kb on - strand, within RR42_RS24545 at 838.937 kb on + strand, within RR42_RS24545 at 838.937 kb on + strand, within RR42_RS24545 at 838.938 kb on - strand, within RR42_RS24545 at 838.938 kb on - strand, within RR42_RS24545 at 839.114 kb on - strand at 839.365 kb on + strand at 839.365 kb on + strand at 839.894 kb on + strand at 839.895 kb on - strand at 839.971 kb on - strand, within RR42_RS24550 at 840.064 kb on - strand, within RR42_RS24550 at 840.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 836,568 + +1.3 836,569 - +1.0 836,569 - -0.2 836,620 + -0.5 836,620 + +0.1 836,673 + -0.9 836,730 + +0.4 836,732 + -1.7 836,733 - +0.7 836,941 - +0.1 837,161 + -0.4 837,161 + -1.0 837,162 - +0.7 837,179 + +0.4 837,179 + +0.0 837,179 + -0.6 837,180 - +0.7 837,180 - +1.5 837,183 + -0.3 837,183 + +0.3 837,183 + -0.7 837,184 - -0.3 837,184 - +0.5 837,184 - +0.7 837,187 + +0.3 837,293 - -0.7 837,293 - -2.2 837,305 + -0.8 837,306 - -0.7 837,306 - -0.6 837,306 - -0.5 837,339 - -1.0 837,369 - +0.5 837,405 - -1.2 837,408 + -1.5 837,408 + -0.2 837,409 - +1.1 837,450 + +0.3 837,450 + +1.1 837,529 + -2.0 837,653 - +0.5 837,745 + RR42_RS24545 0.11 +4.4 837,746 - RR42_RS24545 0.11 -1.3 837,746 - RR42_RS24545 0.11 -0.8 837,751 - RR42_RS24545 0.11 +0.1 837,871 - RR42_RS24545 0.19 -0.4 837,910 + RR42_RS24545 0.21 -1.5 837,911 - RR42_RS24545 0.21 +0.9 837,994 + RR42_RS24545 0.26 +0.4 837,994 + RR42_RS24545 0.26 +1.3 838,064 - RR42_RS24545 0.30 -0.9 838,182 - RR42_RS24545 0.37 +1.1 838,223 - RR42_RS24545 0.40 -0.3 838,223 - RR42_RS24545 0.40 +1.0 838,356 - RR42_RS24545 0.48 +0.4 838,442 - RR42_RS24545 0.53 +0.5 838,442 - RR42_RS24545 0.53 +0.5 838,442 - RR42_RS24545 0.53 +0.4 838,444 + RR42_RS24545 0.53 -0.5 838,444 + RR42_RS24545 0.53 +0.3 838,781 - RR42_RS24545 0.74 -0.2 838,792 + RR42_RS24545 0.75 -1.3 838,792 + RR42_RS24545 0.75 +0.7 838,792 + RR42_RS24545 0.75 -0.5 838,808 + RR42_RS24545 0.76 -0.5 838,811 - RR42_RS24545 0.76 +0.4 838,811 - RR42_RS24545 0.76 +0.4 838,811 - RR42_RS24545 0.76 -0.3 838,888 + RR42_RS24545 0.80 -0.0 838,889 - RR42_RS24545 0.81 -0.1 838,937 + RR42_RS24545 0.83 -0.4 838,937 + RR42_RS24545 0.83 -0.7 838,938 - RR42_RS24545 0.84 +0.6 838,938 - RR42_RS24545 0.84 -1.2 839,114 - +0.7 839,365 + +1.6 839,365 + +0.3 839,894 + +0.3 839,895 - -0.1 839,971 - RR42_RS24550 0.27 -0.0 840,064 - RR42_RS24550 0.78 -0.8 840,092 + -0.9
Or see this region's nucleotide sequence