Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24530 and RR42_RS24535 are separated by 106 nucleotides RR42_RS24535 and RR42_RS24540 are separated by 5 nucleotides
RR42_RS24530: RR42_RS24530 - hypothetical protein, at 835,316 to 836,113
_RS24530
RR42_RS24535: RR42_RS24535 - tRNA-Asn, at 836,220 to 836,301
_RS24535
RR42_RS24540: RR42_RS24540 - tRNA-Gly, at 836,307 to 836,382
_RS24540
Position (kb) 836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 835.327 kb on + strand at 835.327 kb on + strand at 835.327 kb on + strand at 835.327 kb on + strand at 835.328 kb on - strand at 835.328 kb on - strand at 835.328 kb on - strand at 835.434 kb on + strand, within RR42_RS24530 at 835.434 kb on + strand, within RR42_RS24530 at 835.460 kb on - strand, within RR42_RS24530 at 835.460 kb on - strand, within RR42_RS24530 at 835.463 kb on + strand, within RR42_RS24530 at 835.463 kb on + strand, within RR42_RS24530 at 835.463 kb on + strand, within RR42_RS24530 at 835.463 kb on + strand, within RR42_RS24530 at 835.464 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.552 kb on - strand, within RR42_RS24530 at 835.755 kb on + strand, within RR42_RS24530 at 835.756 kb on - strand, within RR42_RS24530 at 835.756 kb on - strand, within RR42_RS24530 at 835.756 kb on - strand, within RR42_RS24530 at 835.936 kb on - strand, within RR42_RS24530 at 835.936 kb on - strand, within RR42_RS24530 at 835.936 kb on - strand, within RR42_RS24530 at 835.936 kb on - strand, within RR42_RS24530 at 835.975 kb on - strand, within RR42_RS24530 at 835.975 kb on - strand, within RR42_RS24530 at 835.975 kb on - strand, within RR42_RS24530 at 836.203 kb on - strand at 836.207 kb on + strand at 836.261 kb on + strand, within RR42_RS24535 at 836.268 kb on + strand, within RR42_RS24535 at 836.305 kb on - strand at 836.315 kb on - strand, within RR42_RS24540 at 836.475 kb on + strand at 836.476 kb on - strand at 836.497 kb on + strand at 836.497 kb on + strand at 836.497 kb on + strand at 836.497 kb on + strand at 836.497 kb on + strand at 836.498 kb on - strand at 836.568 kb on + strand at 836.569 kb on - strand at 836.569 kb on - strand at 836.620 kb on + strand at 836.620 kb on + strand at 836.673 kb on + strand at 836.730 kb on + strand at 836.732 kb on + strand at 836.733 kb on - strand at 836.941 kb on - strand at 837.161 kb on + strand at 837.161 kb on + strand at 837.162 kb on - strand at 837.179 kb on + strand at 837.179 kb on + strand at 837.179 kb on + strand at 837.180 kb on - strand at 837.180 kb on - strand at 837.183 kb on + strand at 837.183 kb on + strand at 837.183 kb on + strand at 837.184 kb on - strand at 837.184 kb on - strand at 837.184 kb on - strand at 837.187 kb on + strand at 837.293 kb on - strand at 837.293 kb on - strand at 837.305 kb on + strand at 837.306 kb on - strand at 837.306 kb on - strand at 837.306 kb on - strand at 837.339 kb on - strand at 837.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 835,327 + +0.5 835,327 + +1.5 835,327 + +0.1 835,327 + +0.2 835,328 - +0.3 835,328 - -1.3 835,328 - +0.1 835,434 + RR42_RS24530 0.15 -0.2 835,434 + RR42_RS24530 0.15 +0.5 835,460 - RR42_RS24530 0.18 -0.5 835,460 - RR42_RS24530 0.18 +0.8 835,463 + RR42_RS24530 0.18 +0.1 835,463 + RR42_RS24530 0.18 +0.4 835,463 + RR42_RS24530 0.18 -0.3 835,463 + RR42_RS24530 0.18 -1.7 835,464 - RR42_RS24530 0.19 +0.5 835,552 - RR42_RS24530 0.30 +2.3 835,552 - RR42_RS24530 0.30 -0.0 835,552 - RR42_RS24530 0.30 +1.0 835,552 - RR42_RS24530 0.30 -1.0 835,552 - RR42_RS24530 0.30 +0.7 835,755 + RR42_RS24530 0.55 -0.3 835,756 - RR42_RS24530 0.55 +1.3 835,756 - RR42_RS24530 0.55 +0.7 835,756 - RR42_RS24530 0.55 -2.0 835,936 - RR42_RS24530 0.78 +2.9 835,936 - RR42_RS24530 0.78 +1.3 835,936 - RR42_RS24530 0.78 +1.7 835,936 - RR42_RS24530 0.78 +0.5 835,975 - RR42_RS24530 0.83 -1.3 835,975 - RR42_RS24530 0.83 +1.3 835,975 - RR42_RS24530 0.83 +0.4 836,203 - +0.4 836,207 + -1.3 836,261 + RR42_RS24535 0.50 -0.6 836,268 + RR42_RS24535 0.59 +1.9 836,305 - +0.2 836,315 - RR42_RS24540 0.11 -0.3 836,475 + -1.6 836,476 - -0.1 836,497 + +0.1 836,497 + -3.2 836,497 + -0.2 836,497 + -0.8 836,497 + +1.1 836,498 - -0.2 836,568 + +1.3 836,569 - +1.0 836,569 - -0.2 836,620 + -0.5 836,620 + +0.1 836,673 + -0.9 836,730 + +0.4 836,732 + -1.7 836,733 - +0.7 836,941 - +0.1 837,161 + -0.4 837,161 + -1.0 837,162 - +0.7 837,179 + +0.4 837,179 + +0.0 837,179 + -0.6 837,180 - +0.7 837,180 - +1.5 837,183 + -0.3 837,183 + +0.3 837,183 + -0.7 837,184 - -0.3 837,184 - +0.5 837,184 - +0.7 837,187 + +0.3 837,293 - -0.7 837,293 - -2.2 837,305 + -0.8 837,306 - -0.7 837,306 - -0.6 837,306 - -0.5 837,339 - -1.0 837,369 - +0.5
Or see this region's nucleotide sequence