Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24265 and RR42_RS24270 are separated by 98 nucleotides
RR42_RS24265: RR42_RS24265 - hypothetical protein, at 771,699 to 772,415
_RS24265
RR42_RS24270: RR42_RS24270 - hypothetical protein, at 772,514 to 773,482
_RS24270
Position (kb) 771
772
773 Strain fitness (log2 ratio) -2
-1
0
1
2 at 770.745 kb on + strand at 770.745 kb on + strand at 770.745 kb on + strand at 770.868 kb on - strand at 770.881 kb on + strand at 770.926 kb on + strand at 770.926 kb on + strand at 770.927 kb on - strand at 771.016 kb on + strand at 771.016 kb on + strand at 771.017 kb on - strand at 771.017 kb on - strand at 771.017 kb on - strand at 771.017 kb on - strand at 771.035 kb on + strand at 771.036 kb on - strand at 771.036 kb on - strand at 771.070 kb on + strand at 771.070 kb on + strand at 771.071 kb on - strand at 771.085 kb on + strand at 771.085 kb on + strand at 771.086 kb on - strand at 771.154 kb on + strand at 771.154 kb on + strand at 771.154 kb on + strand at 771.154 kb on + strand at 771.154 kb on + strand at 771.155 kb on - strand at 771.155 kb on - strand at 771.155 kb on - strand at 771.155 kb on - strand at 771.156 kb on + strand at 771.156 kb on + strand at 771.157 kb on - strand at 771.213 kb on + strand at 771.297 kb on + strand at 771.341 kb on + strand at 771.393 kb on + strand at 771.526 kb on - strand at 771.526 kb on - strand at 771.613 kb on - strand at 771.701 kb on - strand at 771.742 kb on + strand at 771.743 kb on - strand at 771.743 kb on - strand at 771.758 kb on + strand at 771.758 kb on + strand at 771.787 kb on - strand, within RR42_RS24265 at 771.896 kb on + strand, within RR42_RS24265 at 771.955 kb on + strand, within RR42_RS24265 at 771.959 kb on - strand, within RR42_RS24265 at 771.984 kb on + strand, within RR42_RS24265 at 771.985 kb on - strand, within RR42_RS24265 at 771.985 kb on - strand, within RR42_RS24265 at 772.035 kb on + strand, within RR42_RS24265 at 772.036 kb on - strand, within RR42_RS24265 at 772.036 kb on - strand, within RR42_RS24265 at 772.198 kb on + strand, within RR42_RS24265 at 772.198 kb on + strand, within RR42_RS24265 at 772.198 kb on + strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.199 kb on - strand, within RR42_RS24265 at 772.459 kb on + strand at 772.460 kb on - strand at 772.460 kb on - strand at 772.463 kb on + strand at 772.463 kb on + strand at 772.464 kb on - strand at 772.526 kb on + strand at 772.527 kb on - strand at 772.580 kb on - strand at 772.580 kb on - strand at 772.580 kb on - strand at 772.580 kb on - strand at 772.755 kb on + strand, within RR42_RS24270 at 772.853 kb on - strand, within RR42_RS24270 at 772.938 kb on + strand, within RR42_RS24270 at 772.938 kb on + strand, within RR42_RS24270 at 772.939 kb on - strand at 773.164 kb on - strand, within RR42_RS24270 at 773.164 kb on - strand, within RR42_RS24270 at 773.164 kb on - strand, within RR42_RS24270 at 773.230 kb on - strand, within RR42_RS24270
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 770,745 + -1.0 770,745 + -0.5 770,745 + -0.7 770,868 - +1.3 770,881 + +1.0 770,926 + +0.7 770,926 + +0.5 770,927 - +0.3 771,016 + +0.5 771,016 + -0.3 771,017 - +0.8 771,017 - -0.5 771,017 - +0.1 771,017 - -0.3 771,035 + +1.2 771,036 - +0.0 771,036 - -0.4 771,070 + +1.1 771,070 + -0.2 771,071 - -0.0 771,085 + -0.0 771,085 + +0.8 771,086 - -0.6 771,154 + -0.7 771,154 + -0.7 771,154 + +1.6 771,154 + +0.5 771,154 + -1.8 771,155 - +1.3 771,155 - -1.6 771,155 - +0.9 771,155 - +0.0 771,156 + +0.8 771,156 + -0.6 771,157 - -0.5 771,213 + +0.3 771,297 + -0.8 771,341 + -0.5 771,393 + +0.3 771,526 - +1.3 771,526 - +0.2 771,613 - +0.5 771,701 - +0.5 771,742 + -1.2 771,743 - -0.2 771,743 - +0.3 771,758 + -0.4 771,758 + +0.5 771,787 - RR42_RS24265 0.12 -1.4 771,896 + RR42_RS24265 0.27 -0.2 771,955 + RR42_RS24265 0.36 +0.8 771,959 - RR42_RS24265 0.36 -0.1 771,984 + RR42_RS24265 0.40 -0.2 771,985 - RR42_RS24265 0.40 -1.4 771,985 - RR42_RS24265 0.40 -0.2 772,035 + RR42_RS24265 0.47 -0.5 772,036 - RR42_RS24265 0.47 -0.0 772,036 - RR42_RS24265 0.47 +0.7 772,198 + RR42_RS24265 0.70 +1.3 772,198 + RR42_RS24265 0.70 +0.8 772,198 + RR42_RS24265 0.70 -0.0 772,199 - RR42_RS24265 0.70 -1.1 772,199 - RR42_RS24265 0.70 +0.3 772,199 - RR42_RS24265 0.70 +0.1 772,199 - RR42_RS24265 0.70 -0.0 772,199 - RR42_RS24265 0.70 -1.5 772,199 - RR42_RS24265 0.70 -0.5 772,459 + -0.4 772,460 - -0.8 772,460 - +0.7 772,463 + +0.6 772,463 + +0.3 772,464 - +0.5 772,526 + -0.1 772,527 - -0.2 772,580 - +2.3 772,580 - -0.7 772,580 - -1.7 772,580 - -0.6 772,755 + RR42_RS24270 0.25 +1.9 772,853 - RR42_RS24270 0.35 -0.6 772,938 + RR42_RS24270 0.44 +0.4 772,938 + RR42_RS24270 0.44 +0.3 772,939 - -0.7 773,164 - RR42_RS24270 0.67 +0.5 773,164 - RR42_RS24270 0.67 -0.1 773,164 - RR42_RS24270 0.67 -0.1 773,230 - RR42_RS24270 0.74 -0.2
Or see this region's nucleotide sequence