Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23150 and RR42_RS23155 are separated by 63 nucleotides RR42_RS23155 and RR42_RS23160 are separated by 11 nucleotides
RR42_RS23150: RR42_RS23150 - ABC transporter substrate-binding protein, at 525,856 to 526,839
_RS23150
RR42_RS23155: RR42_RS23155 - acyl-CoA dehydrogenase, at 526,903 to 528,084
_RS23155
RR42_RS23160: RR42_RS23160 - AMP-dependent synthetase, at 528,096 to 529,649
_RS23160
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 526.202 kb on + strand, within RR42_RS23150 at 526.286 kb on + strand, within RR42_RS23150 at 526.373 kb on + strand, within RR42_RS23150 at 526.430 kb on + strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.431 kb on - strand, within RR42_RS23150 at 526.574 kb on + strand, within RR42_RS23150 at 526.575 kb on - strand, within RR42_RS23150 at 526.839 kb on + strand at 526.840 kb on - strand at 526.856 kb on - strand at 526.947 kb on + strand at 526.947 kb on + strand at 527.057 kb on - strand, within RR42_RS23155 at 527.057 kb on - strand, within RR42_RS23155 at 527.270 kb on + strand, within RR42_RS23155 at 527.288 kb on + strand, within RR42_RS23155 at 527.289 kb on - strand, within RR42_RS23155 at 527.439 kb on + strand, within RR42_RS23155 at 527.440 kb on - strand, within RR42_RS23155 at 527.462 kb on + strand, within RR42_RS23155 at 527.462 kb on + strand, within RR42_RS23155 at 527.592 kb on - strand, within RR42_RS23155 at 527.592 kb on - strand, within RR42_RS23155 at 527.729 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.756 kb on + strand, within RR42_RS23155 at 527.757 kb on - strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.766 kb on + strand, within RR42_RS23155 at 527.767 kb on - strand, within RR42_RS23155 at 527.912 kb on + strand, within RR42_RS23155 at 527.912 kb on + strand, within RR42_RS23155 at 527.913 kb on - strand, within RR42_RS23155 at 527.913 kb on - strand, within RR42_RS23155 at 528.026 kb on + strand at 528.027 kb on - strand at 528.098 kb on - strand at 528.114 kb on + strand at 528.365 kb on - strand, within RR42_RS23160 at 528.365 kb on - strand, within RR42_RS23160 at 528.442 kb on + strand, within RR42_RS23160 at 528.443 kb on - strand, within RR42_RS23160 at 528.443 kb on - strand, within RR42_RS23160 at 528.443 kb on - strand, within RR42_RS23160 at 528.448 kb on + strand, within RR42_RS23160 at 528.449 kb on - strand, within RR42_RS23160 at 528.449 kb on - strand, within RR42_RS23160 at 528.449 kb on - strand, within RR42_RS23160 at 528.742 kb on + strand, within RR42_RS23160 at 528.818 kb on - strand, within RR42_RS23160 at 528.878 kb on + strand, within RR42_RS23160 at 528.878 kb on + strand, within RR42_RS23160 at 528.878 kb on + strand, within RR42_RS23160 at 528.878 kb on + strand, within RR42_RS23160 at 528.989 kb on - strand, within RR42_RS23160 at 528.989 kb on - strand, within RR42_RS23160 at 528.994 kb on + strand, within RR42_RS23160 at 528.995 kb on - strand, within RR42_RS23160 at 528.995 kb on - strand, within RR42_RS23160
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 526,202 + RR42_RS23150 0.35 +0.5 526,286 + RR42_RS23150 0.44 -0.0 526,373 + RR42_RS23150 0.53 -0.8 526,430 + RR42_RS23150 0.58 -0.3 526,431 - RR42_RS23150 0.58 +0.3 526,431 - RR42_RS23150 0.58 +1.2 526,431 - RR42_RS23150 0.58 -0.5 526,431 - RR42_RS23150 0.58 +0.9 526,431 - RR42_RS23150 0.58 -0.5 526,431 - RR42_RS23150 0.58 -0.6 526,574 + RR42_RS23150 0.73 +1.7 526,575 - RR42_RS23150 0.73 -1.1 526,839 + +0.8 526,840 - +0.4 526,856 - +0.4 526,947 + +0.8 526,947 + +1.6 527,057 - RR42_RS23155 0.13 +0.5 527,057 - RR42_RS23155 0.13 +0.4 527,270 + RR42_RS23155 0.31 -1.5 527,288 + RR42_RS23155 0.33 -0.7 527,289 - RR42_RS23155 0.33 -0.4 527,439 + RR42_RS23155 0.45 +0.6 527,440 - RR42_RS23155 0.45 -1.3 527,462 + RR42_RS23155 0.47 +0.7 527,462 + RR42_RS23155 0.47 +0.2 527,592 - RR42_RS23155 0.58 +0.5 527,592 - RR42_RS23155 0.58 +1.0 527,729 + RR42_RS23155 0.70 -0.1 527,756 + RR42_RS23155 0.72 -0.8 527,756 + RR42_RS23155 0.72 +1.5 527,756 + RR42_RS23155 0.72 -1.2 527,757 - RR42_RS23155 0.72 +0.7 527,766 + RR42_RS23155 0.73 -0.2 527,766 + RR42_RS23155 0.73 +0.8 527,766 + RR42_RS23155 0.73 +0.5 527,766 + RR42_RS23155 0.73 +0.4 527,767 - RR42_RS23155 0.73 +0.6 527,912 + RR42_RS23155 0.85 +1.6 527,912 + RR42_RS23155 0.85 -1.5 527,913 - RR42_RS23155 0.85 -0.1 527,913 - RR42_RS23155 0.85 +1.7 528,026 + +0.8 528,027 - +0.2 528,098 - -0.3 528,114 + +0.1 528,365 - RR42_RS23160 0.17 -0.8 528,365 - RR42_RS23160 0.17 +0.5 528,442 + RR42_RS23160 0.22 -0.6 528,443 - RR42_RS23160 0.22 +0.1 528,443 - RR42_RS23160 0.22 -1.0 528,443 - RR42_RS23160 0.22 -0.2 528,448 + RR42_RS23160 0.23 -2.5 528,449 - RR42_RS23160 0.23 +0.6 528,449 - RR42_RS23160 0.23 -1.0 528,449 - RR42_RS23160 0.23 +0.6 528,742 + RR42_RS23160 0.42 +0.1 528,818 - RR42_RS23160 0.46 +0.2 528,878 + RR42_RS23160 0.50 +0.6 528,878 + RR42_RS23160 0.50 +0.0 528,878 + RR42_RS23160 0.50 -0.2 528,878 + RR42_RS23160 0.50 -0.7 528,989 - RR42_RS23160 0.57 -0.8 528,989 - RR42_RS23160 0.57 -3.2 528,994 + RR42_RS23160 0.58 +1.0 528,995 - RR42_RS23160 0.58 +0.5 528,995 - RR42_RS23160 0.58 -0.1
Or see this region's nucleotide sequence