Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22575 and RR42_RS22580 are separated by 82 nucleotides RR42_RS22580 and RR42_RS22585 are separated by 179 nucleotides RR42_RS22585 and RR42_RS22590 are separated by 185 nucleotides RR42_RS22590 and RR42_RS22595 are separated by 144 nucleotides
RR42_RS22575: RR42_RS22575 - hypothetical protein, at 400,840 to 401,649
_RS22575
RR42_RS22580: RR42_RS22580 - hypothetical protein, at 401,732 to 402,106
_RS22580
RR42_RS22585: RR42_RS22585 - MarR family transcriptional regulator, at 402,286 to 402,783
_RS22585
RR42_RS22590: RR42_RS22590 - organic hydroperoxide resistance protein, at 402,969 to 403,394
_RS22590
RR42_RS22595: RR42_RS22595 - LysR family transcriptional regulator, at 403,539 to 404,465
_RS22595
Position (kb) 402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 401.416 kb on - strand, within RR42_RS22575 at 401.861 kb on + strand, within RR42_RS22580 at 401.861 kb on + strand, within RR42_RS22580 at 401.861 kb on + strand, within RR42_RS22580 at 401.862 kb on - strand, within RR42_RS22580 at 401.972 kb on + strand, within RR42_RS22580 at 401.973 kb on - strand, within RR42_RS22580 at 402.049 kb on + strand, within RR42_RS22580 at 402.170 kb on + strand at 402.170 kb on + strand at 402.170 kb on + strand at 402.171 kb on - strand at 402.171 kb on - strand at 402.171 kb on - strand at 402.211 kb on - strand at 402.220 kb on + strand at 402.235 kb on + strand at 402.389 kb on - strand, within RR42_RS22585 at 402.461 kb on - strand, within RR42_RS22585 at 402.767 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.781 kb on + strand at 402.864 kb on - strand at 402.866 kb on - strand at 402.878 kb on - strand at 402.946 kb on - strand at 402.953 kb on - strand at 402.990 kb on + strand at 402.990 kb on + strand at 403.059 kb on - strand, within RR42_RS22590 at 403.368 kb on - strand at 403.392 kb on + strand at 403.393 kb on - strand at 403.444 kb on + strand at 403.445 kb on - strand at 403.445 kb on - strand at 403.546 kb on - strand at 403.645 kb on - strand, within RR42_RS22595 at 403.645 kb on - strand, within RR42_RS22595
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 401,416 - RR42_RS22575 0.71 -0.1 401,861 + RR42_RS22580 0.34 -0.7 401,861 + RR42_RS22580 0.34 -0.4 401,861 + RR42_RS22580 0.34 -0.5 401,862 - RR42_RS22580 0.35 +0.4 401,972 + RR42_RS22580 0.64 +0.4 401,973 - RR42_RS22580 0.64 -0.3 402,049 + RR42_RS22580 0.85 +3.5 402,170 + -2.5 402,170 + -0.7 402,170 + -1.0 402,171 - -0.5 402,171 - -0.2 402,171 - -0.6 402,211 - -0.4 402,220 + +0.3 402,235 + -0.9 402,389 - RR42_RS22585 0.21 -2.1 402,461 - RR42_RS22585 0.35 -1.2 402,767 + -0.3 402,781 + -0.1 402,781 + -0.3 402,781 + -0.8 402,781 + +0.2 402,864 - -0.9 402,866 - +0.5 402,878 - -1.0 402,946 - -3.5 402,953 - -1.0 402,990 + +0.1 402,990 + -0.2 403,059 - RR42_RS22590 0.21 +0.4 403,368 - +0.4 403,392 + +0.6 403,393 - -2.0 403,444 + -0.2 403,445 - -0.6 403,445 - +0.4 403,546 - +0.2 403,645 - RR42_RS22595 0.11 +0.5 403,645 - RR42_RS22595 0.11 -1.5
Or see this region's nucleotide sequence