Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22465

Experiment: R2A with Vancomycin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22455 and RR42_RS22460 are separated by 146 nucleotidesRR42_RS22460 and RR42_RS22465 are separated by 67 nucleotidesRR42_RS22465 and RR42_RS22470 are separated by 173 nucleotides RR42_RS22455: RR42_RS22455 - 2-aminoethylphosphonate aminotransferase, at 373,963 to 375,027 _RS22455 RR42_RS22460: RR42_RS22460 - ABC transporter, at 375,174 to 375,872 _RS22460 RR42_RS22465: RR42_RS22465 - membrane protein, at 375,940 to 377,994 _RS22465 RR42_RS22470: RR42_RS22470 - MFS transporter, at 378,168 to 379,493 _RS22470 Position (kb) 375 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 374.970 kb on + strandat 375.026 kb on - strandat 375.050 kb on + strandat 375.101 kb on + strandat 375.101 kb on + strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.107 kb on + strandat 375.107 kb on + strandat 375.108 kb on - strandat 375.108 kb on - strandat 375.260 kb on + strand, within RR42_RS22460at 375.471 kb on + strand, within RR42_RS22460at 375.472 kb on - strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.665 kb on - strand, within RR42_RS22460at 375.665 kb on - strand, within RR42_RS22460at 375.761 kb on + strand, within RR42_RS22460at 375.761 kb on + strand, within RR42_RS22460at 375.762 kb on - strand, within RR42_RS22460at 375.847 kb on - strandat 375.847 kb on - strandat 375.860 kb on + strandat 375.861 kb on - strandat 375.875 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.888 kb on - strandat 375.888 kb on - strandat 375.925 kb on + strandat 375.925 kb on + strandat 375.933 kb on + strandat 376.065 kb on + strandat 376.193 kb on + strand, within RR42_RS22465at 376.194 kb on - strand, within RR42_RS22465at 376.634 kb on + strand, within RR42_RS22465at 376.635 kb on - strand, within RR42_RS22465at 376.766 kb on + strand, within RR42_RS22465at 376.766 kb on + strand, within RR42_RS22465at 376.767 kb on - strand, within RR42_RS22465at 376.823 kb on + strand, within RR42_RS22465at 376.824 kb on - strand, within RR42_RS22465at 377.060 kb on + strand, within RR42_RS22465at 377.061 kb on - strand, within RR42_RS22465at 377.061 kb on - strand, within RR42_RS22465at 377.214 kb on - strand, within RR42_RS22465at 377.427 kb on - strand, within RR42_RS22465at 377.585 kb on + strand, within RR42_RS22465at 377.585 kb on + strand, within RR42_RS22465at 377.585 kb on + strand, within RR42_RS22465at 377.586 kb on - strand, within RR42_RS22465at 377.588 kb on + strand, within RR42_RS22465at 377.588 kb on + strand, within RR42_RS22465at 377.588 kb on + strand, within RR42_RS22465at 377.589 kb on - strand, within RR42_RS22465at 377.589 kb on - strand, within RR42_RS22465at 377.627 kb on + strand, within RR42_RS22465at 377.628 kb on - strand, within RR42_RS22465at 377.927 kb on + strandat 377.928 kb on - strandat 377.978 kb on + strandat 377.979 kb on - strandat 377.983 kb on - strandat 378.244 kb on + strandat 378.244 kb on + strandat 378.245 kb on - strandat 378.245 kb on - strandat 378.245 kb on - strandat 378.335 kb on + strand, within RR42_RS22470at 378.608 kb on - strand, within RR42_RS22470at 378.707 kb on + strand, within RR42_RS22470at 378.707 kb on + strand, within RR42_RS22470at 378.708 kb on - strand, within RR42_RS22470at 378.721 kb on + strand, within RR42_RS22470at 378.722 kb on - strand, within RR42_RS22470at 378.934 kb on + strand, within RR42_RS22470at 378.935 kb on - strand, within RR42_RS22470

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml
remove
374,970 + -0.1
375,026 - +1.0
375,050 + +0.5
375,101 + -0.2
375,101 + -0.8
375,102 - +2.3
375,102 - -0.5
375,102 - +0.0
375,102 - +0.6
375,102 - -0.6
375,107 + +0.5
375,107 + -1.3
375,108 - -0.8
375,108 - +0.6
375,260 + RR42_RS22460 0.12 -0.5
375,471 + RR42_RS22460 0.42 +0.2
375,472 - RR42_RS22460 0.43 +1.8
375,664 + RR42_RS22460 0.70 +0.1
375,664 + RR42_RS22460 0.70 -1.5
375,664 + RR42_RS22460 0.70 -0.3
375,665 - RR42_RS22460 0.70 -0.8
375,665 - RR42_RS22460 0.70 +0.1
375,761 + RR42_RS22460 0.84 -0.0
375,761 + RR42_RS22460 0.84 -0.1
375,762 - RR42_RS22460 0.84 -0.3
375,847 - +0.4
375,847 - +0.7
375,860 + -0.7
375,861 - +0.1
375,875 + +0.4
375,887 + +0.4
375,887 + -0.5
375,887 + +0.3
375,887 + -1.3
375,888 - -0.8
375,888 - +1.1
375,925 + -0.1
375,925 + -0.4
375,933 + +2.0
376,065 + -1.2
376,193 + RR42_RS22465 0.12 -1.1
376,194 - RR42_RS22465 0.12 +1.0
376,634 + RR42_RS22465 0.34 -1.1
376,635 - RR42_RS22465 0.34 -1.3
376,766 + RR42_RS22465 0.40 -0.3
376,766 + RR42_RS22465 0.40 -0.3
376,767 - RR42_RS22465 0.40 -0.4
376,823 + RR42_RS22465 0.43 -0.1
376,824 - RR42_RS22465 0.43 -0.8
377,060 + RR42_RS22465 0.55 +1.3
377,061 - RR42_RS22465 0.55 -2.0
377,061 - RR42_RS22465 0.55 -0.8
377,214 - RR42_RS22465 0.62 -0.2
377,427 - RR42_RS22465 0.72 +0.9
377,585 + RR42_RS22465 0.80 -0.7
377,585 + RR42_RS22465 0.80 +1.5
377,585 + RR42_RS22465 0.80 +0.6
377,586 - RR42_RS22465 0.80 -0.2
377,588 + RR42_RS22465 0.80 +0.2
377,588 + RR42_RS22465 0.80 -1.2
377,588 + RR42_RS22465 0.80 +0.2
377,589 - RR42_RS22465 0.80 +1.9
377,589 - RR42_RS22465 0.80 +1.6
377,627 + RR42_RS22465 0.82 -0.5
377,628 - RR42_RS22465 0.82 +1.4
377,927 + -0.5
377,928 - +0.8
377,978 + +1.6
377,979 - -0.4
377,983 - -1.9
378,244 + +0.6
378,244 + +0.5
378,245 - -0.4
378,245 - -1.4
378,245 - -1.3
378,335 + RR42_RS22470 0.13 +0.4
378,608 - RR42_RS22470 0.33 -0.4
378,707 + RR42_RS22470 0.41 +0.1
378,707 + RR42_RS22470 0.41 +0.3
378,708 - RR42_RS22470 0.41 -0.5
378,721 + RR42_RS22470 0.42 +1.3
378,722 - RR42_RS22470 0.42 -0.6
378,934 + RR42_RS22470 0.58 +1.2
378,935 - RR42_RS22470 0.58 -1.0

Or see this region's nucleotide sequence