Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21590 and RR42_RS21595 overlap by 4 nucleotides RR42_RS21595 and RR42_RS21600 are separated by 144 nucleotides
RR42_RS21590: RR42_RS21590 - hypothetical protein, at 170,315 to 173,065
_RS21590
RR42_RS21595: RR42_RS21595 - IclR family transcriptional regulator, at 173,062 to 173,826
_RS21595
RR42_RS21600: RR42_RS21600 - inorganic pyrophosphatase/exopolyphosphatase, at 173,971 to 174,999
_RS21600
Position (kb) 173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 172.128 kb on + strand, within RR42_RS21590 at 172.129 kb on - strand, within RR42_RS21590 at 172.155 kb on - strand, within RR42_RS21590 at 172.448 kb on + strand, within RR42_RS21590 at 172.451 kb on + strand, within RR42_RS21590 at 172.451 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.544 kb on + strand, within RR42_RS21590 at 172.545 kb on - strand, within RR42_RS21590 at 172.613 kb on + strand, within RR42_RS21590 at 172.613 kb on + strand, within RR42_RS21590 at 172.901 kb on + strand at 172.976 kb on + strand at 172.977 kb on - strand at 172.977 kb on - strand at 173.646 kb on + strand, within RR42_RS21595 at 173.646 kb on - strand, within RR42_RS21595 at 173.784 kb on - strand at 173.826 kb on + strand at 173.826 kb on + strand at 173.826 kb on + strand at 173.869 kb on + strand at 174.166 kb on + strand, within RR42_RS21600 at 174.166 kb on + strand, within RR42_RS21600 at 174.242 kb on + strand, within RR42_RS21600 at 174.242 kb on + strand, within RR42_RS21600 at 174.243 kb on - strand, within RR42_RS21600 at 174.414 kb on - strand, within RR42_RS21600 at 174.518 kb on + strand, within RR42_RS21600 at 174.519 kb on - strand, within RR42_RS21600 at 174.536 kb on + strand, within RR42_RS21600 at 174.540 kb on - strand, within RR42_RS21600 at 174.680 kb on + strand, within RR42_RS21600 at 174.681 kb on - strand, within RR42_RS21600 at 174.803 kb on - strand, within RR42_RS21600 at 174.819 kb on + strand, within RR42_RS21600 at 174.820 kb on - strand, within RR42_RS21600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 172,128 + RR42_RS21590 0.66 -0.8 172,129 - RR42_RS21590 0.66 -0.4 172,155 - RR42_RS21590 0.67 -0.6 172,448 + RR42_RS21590 0.78 -0.5 172,451 + RR42_RS21590 0.78 +0.2 172,451 + RR42_RS21590 0.78 -1.5 172,505 + RR42_RS21590 0.80 +0.7 172,505 + RR42_RS21590 0.80 -0.4 172,505 + RR42_RS21590 0.80 -0.7 172,544 + RR42_RS21590 0.81 -0.8 172,545 - RR42_RS21590 0.81 -0.1 172,613 + RR42_RS21590 0.84 -0.4 172,613 + RR42_RS21590 0.84 -0.9 172,901 + +1.0 172,976 + -0.3 172,977 - +0.3 172,977 - +0.5 173,646 + RR42_RS21595 0.76 -0.4 173,646 - RR42_RS21595 0.76 -1.8 173,784 - -0.0 173,826 + +0.4 173,826 + -2.9 173,826 + -0.7 173,869 + -0.2 174,166 + RR42_RS21600 0.19 -2.5 174,166 + RR42_RS21600 0.19 +0.4 174,242 + RR42_RS21600 0.26 -0.9 174,242 + RR42_RS21600 0.26 +2.0 174,243 - RR42_RS21600 0.26 +0.2 174,414 - RR42_RS21600 0.43 -0.2 174,518 + RR42_RS21600 0.53 +0.2 174,519 - RR42_RS21600 0.53 -0.8 174,536 + RR42_RS21600 0.55 +0.1 174,540 - RR42_RS21600 0.55 -0.5 174,680 + RR42_RS21600 0.69 +0.3 174,681 - RR42_RS21600 0.69 -0.2 174,803 - RR42_RS21600 0.81 +0.1 174,819 + RR42_RS21600 0.82 +0.6 174,820 - RR42_RS21600 0.83 -0.4
Or see this region's nucleotide sequence