Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20670 and RR42_RS20675 are separated by 155 nucleotides RR42_RS20675 and RR42_RS20680 are separated by 83 nucleotides RR42_RS20680 and RR42_RS20685 are separated by 35 nucleotides
RR42_RS20670: RR42_RS20670 - glutathione S-transferase, at 4,488,694 to 4,489,302
_RS20670
RR42_RS20675: RR42_RS20675 - AsnC family transcriptional regulator, at 4,489,458 to 4,489,916
_RS20675
RR42_RS20680: RR42_RS20680 - membrane protein, at 4,490,000 to 4,490,851
_RS20680
RR42_RS20685: RR42_RS20685 - lipoprotein, at 4,490,887 to 4,492,152
_RS20685
Position (kb) 4489
4490
4491 Strain fitness (log2 ratio) -2
-1
0
1 at 4489.098 kb on - strand, within RR42_RS20670 at 4489.271 kb on + strand at 4489.272 kb on - strand at 4489.302 kb on + strand at 4489.303 kb on - strand at 4489.356 kb on + strand at 4489.356 kb on + strand at 4489.668 kb on - strand, within RR42_RS20675 at 4489.668 kb on - strand, within RR42_RS20675 at 4489.686 kb on + strand, within RR42_RS20675 at 4489.686 kb on + strand, within RR42_RS20675 at 4489.686 kb on + strand, within RR42_RS20675 at 4489.909 kb on + strand at 4489.909 kb on + strand at 4489.919 kb on + strand at 4489.919 kb on + strand at 4489.919 kb on + strand at 4489.920 kb on - strand at 4490.008 kb on + strand at 4490.127 kb on + strand, within RR42_RS20680 at 4490.127 kb on + strand, within RR42_RS20680 at 4490.128 kb on - strand, within RR42_RS20680 at 4490.331 kb on + strand, within RR42_RS20680 at 4490.868 kb on - strand at 4490.916 kb on - strand at 4490.916 kb on - strand at 4491.161 kb on + strand, within RR42_RS20685 at 4491.162 kb on - strand, within RR42_RS20685 at 4491.329 kb on + strand, within RR42_RS20685 at 4491.330 kb on - strand, within RR42_RS20685 at 4491.330 kb on - strand, within RR42_RS20685 at 4491.380 kb on + strand, within RR42_RS20685 at 4491.380 kb on + strand, within RR42_RS20685 at 4491.381 kb on - strand, within RR42_RS20685 at 4491.381 kb on - strand, within RR42_RS20685 at 4491.504 kb on - strand, within RR42_RS20685 at 4491.504 kb on - strand, within RR42_RS20685 at 4491.624 kb on - strand, within RR42_RS20685
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 4,489,098 - RR42_RS20670 0.66 -0.1 4,489,271 + +0.8 4,489,272 - +0.0 4,489,302 + +0.1 4,489,303 - -0.1 4,489,356 + +0.0 4,489,356 + +1.6 4,489,668 - RR42_RS20675 0.46 +0.3 4,489,668 - RR42_RS20675 0.46 -0.6 4,489,686 + RR42_RS20675 0.50 +1.2 4,489,686 + RR42_RS20675 0.50 +0.5 4,489,686 + RR42_RS20675 0.50 -0.3 4,489,909 + +0.7 4,489,909 + -1.1 4,489,919 + -0.3 4,489,919 + -0.3 4,489,919 + -1.2 4,489,920 - +1.2 4,490,008 + +0.4 4,490,127 + RR42_RS20680 0.15 -1.5 4,490,127 + RR42_RS20680 0.15 +1.4 4,490,128 - RR42_RS20680 0.15 -1.3 4,490,331 + RR42_RS20680 0.39 -0.3 4,490,868 - -0.8 4,490,916 - -0.2 4,490,916 - -0.1 4,491,161 + RR42_RS20685 0.22 -2.3 4,491,162 - RR42_RS20685 0.22 -0.3 4,491,329 + RR42_RS20685 0.35 +0.0 4,491,330 - RR42_RS20685 0.35 +0.2 4,491,330 - RR42_RS20685 0.35 +1.2 4,491,380 + RR42_RS20685 0.39 +0.7 4,491,380 + RR42_RS20685 0.39 +0.7 4,491,381 - RR42_RS20685 0.39 +0.3 4,491,381 - RR42_RS20685 0.39 +0.7 4,491,504 - RR42_RS20685 0.49 +1.0 4,491,504 - RR42_RS20685 0.49 -0.6 4,491,624 - RR42_RS20685 0.58 +0.5
Or see this region's nucleotide sequence