Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19675 and RR42_RS19680 are separated by 175 nucleotides RR42_RS19680 and RR42_RS19685 are separated by 130 nucleotides RR42_RS19685 and RR42_RS19690 are separated by 63 nucleotides
RR42_RS19675: RR42_RS19675 - SoxA protein, at 4,251,770 to 4,252,600
_RS19675
RR42_RS19680: RR42_RS19680 - hypothetical protein, at 4,252,776 to 4,253,231
_RS19680
RR42_RS19685: RR42_RS19685 - thiosulfate oxidation carrier complex protein SoxZ, at 4,253,362 to 4,253,673
_RS19685
RR42_RS19690: RR42_RS19690 - Tat pathway signal protein, at 4,253,737 to 4,254,192
_RS19690
Position (kb) 4252
4253
4254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4251.795 kb on + strand at 4251.795 kb on + strand at 4251.796 kb on - strand at 4251.796 kb on - strand at 4251.796 kb on - strand at 4251.796 kb on - strand at 4251.858 kb on + strand, within RR42_RS19675 at 4251.897 kb on + strand, within RR42_RS19675 at 4251.898 kb on - strand, within RR42_RS19675 at 4251.920 kb on + strand, within RR42_RS19675 at 4251.920 kb on + strand, within RR42_RS19675 at 4251.961 kb on - strand, within RR42_RS19675 at 4251.961 kb on - strand, within RR42_RS19675 at 4251.961 kb on - strand, within RR42_RS19675 at 4252.060 kb on - strand, within RR42_RS19675 at 4252.102 kb on - strand, within RR42_RS19675 at 4252.269 kb on + strand, within RR42_RS19675 at 4252.664 kb on + strand at 4252.664 kb on + strand at 4252.664 kb on + strand at 4252.665 kb on - strand at 4252.665 kb on - strand at 4252.733 kb on + strand at 4252.743 kb on + strand at 4252.743 kb on + strand at 4252.744 kb on - strand at 4252.744 kb on - strand at 4252.758 kb on + strand at 4252.763 kb on - strand at 4252.763 kb on - strand at 4252.773 kb on + strand at 4252.774 kb on - strand at 4252.774 kb on - strand at 4252.777 kb on + strand at 4252.777 kb on + strand at 4252.778 kb on - strand at 4252.787 kb on + strand at 4252.788 kb on - strand at 4252.788 kb on - strand at 4252.788 kb on - strand at 4252.789 kb on + strand at 4252.789 kb on + strand at 4252.789 kb on + strand at 4252.789 kb on + strand at 4252.789 kb on + strand at 4252.790 kb on - strand at 4252.790 kb on - strand at 4252.790 kb on - strand at 4252.790 kb on - strand at 4252.790 kb on - strand at 4252.790 kb on - strand at 4252.790 kb on - strand at 4252.795 kb on + strand at 4252.795 kb on + strand at 4252.795 kb on + strand at 4252.796 kb on - strand at 4252.796 kb on - strand at 4252.796 kb on - strand at 4252.796 kb on - strand at 4252.842 kb on + strand, within RR42_RS19680 at 4252.843 kb on - strand, within RR42_RS19680 at 4252.898 kb on + strand, within RR42_RS19680 at 4252.899 kb on - strand, within RR42_RS19680 at 4252.899 kb on - strand at 4253.238 kb on + strand at 4253.304 kb on + strand at 4253.305 kb on - strand at 4253.506 kb on + strand, within RR42_RS19685 at 4253.507 kb on - strand, within RR42_RS19685 at 4253.507 kb on - strand, within RR42_RS19685 at 4253.653 kb on + strand at 4253.653 kb on + strand at 4253.654 kb on - strand at 4253.654 kb on - strand at 4253.693 kb on - strand at 4253.786 kb on + strand, within RR42_RS19690 at 4253.787 kb on - strand, within RR42_RS19690 at 4253.787 kb on - strand, within RR42_RS19690 at 4253.816 kb on + strand, within RR42_RS19690 at 4253.817 kb on - strand, within RR42_RS19690 at 4254.169 kb on + strand at 4254.169 kb on + strand at 4254.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 4,251,795 + -0.1 4,251,795 + +0.4 4,251,796 - -0.7 4,251,796 - -0.5 4,251,796 - -0.6 4,251,796 - +0.6 4,251,858 + RR42_RS19675 0.11 +0.2 4,251,897 + RR42_RS19675 0.15 +0.1 4,251,898 - RR42_RS19675 0.15 -0.4 4,251,920 + RR42_RS19675 0.18 +0.7 4,251,920 + RR42_RS19675 0.18 +0.9 4,251,961 - RR42_RS19675 0.23 -0.4 4,251,961 - RR42_RS19675 0.23 -0.4 4,251,961 - RR42_RS19675 0.23 -0.8 4,252,060 - RR42_RS19675 0.35 +0.9 4,252,102 - RR42_RS19675 0.40 +0.2 4,252,269 + RR42_RS19675 0.60 -0.5 4,252,664 + -1.3 4,252,664 + -0.2 4,252,664 + +1.9 4,252,665 - +1.2 4,252,665 - -0.8 4,252,733 + -0.6 4,252,743 + -0.5 4,252,743 + +0.5 4,252,744 - +0.7 4,252,744 - -0.3 4,252,758 + +0.4 4,252,763 - -0.1 4,252,763 - +0.5 4,252,773 + +0.1 4,252,774 - -0.3 4,252,774 - -0.1 4,252,777 + +0.7 4,252,777 + +0.8 4,252,778 - -0.4 4,252,787 + +0.4 4,252,788 - -0.5 4,252,788 - +0.3 4,252,788 - +0.6 4,252,789 + +0.6 4,252,789 + -0.2 4,252,789 + +0.2 4,252,789 + -0.3 4,252,789 + -2.1 4,252,790 - -0.2 4,252,790 - +0.0 4,252,790 - -0.1 4,252,790 - -0.1 4,252,790 - +0.3 4,252,790 - -0.4 4,252,790 - +0.7 4,252,795 + -1.3 4,252,795 + +0.4 4,252,795 + -1.2 4,252,796 - +1.7 4,252,796 - -1.9 4,252,796 - +1.1 4,252,796 - -1.1 4,252,842 + RR42_RS19680 0.14 -1.0 4,252,843 - RR42_RS19680 0.15 -0.8 4,252,898 + RR42_RS19680 0.27 -2.1 4,252,899 - RR42_RS19680 0.27 -2.7 4,252,899 - -0.3 4,253,238 + -0.6 4,253,304 + -0.0 4,253,305 - +1.6 4,253,506 + RR42_RS19685 0.46 +0.2 4,253,507 - RR42_RS19685 0.46 -0.5 4,253,507 - RR42_RS19685 0.46 -1.6 4,253,653 + +1.0 4,253,653 + -2.5 4,253,654 - -0.1 4,253,654 - -0.7 4,253,693 - -0.8 4,253,786 + RR42_RS19690 0.11 -2.9 4,253,787 - RR42_RS19690 0.11 +0.1 4,253,787 - RR42_RS19690 0.11 -1.8 4,253,816 + RR42_RS19690 0.17 -0.9 4,253,817 - RR42_RS19690 0.18 -0.5 4,254,169 + -0.9 4,254,169 + +0.8 4,254,170 - +0.5
Or see this region's nucleotide sequence