Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18665 and RR42_RS18670 are separated by 6 nucleotides RR42_RS18670 and RR42_RS18675 are separated by 70 nucleotides
RR42_RS18665: RR42_RS18665 - restriction endonuclease, at 4,040,083 to 4,042,467
_RS18665
RR42_RS18670: RR42_RS18670 - metal-dependent hydrolase, at 4,042,474 to 4,043,160
_RS18670
RR42_RS18675: RR42_RS18675 - restriction endonuclease subunit R, at 4,043,231 to 4,046,563
_RS18675
Position (kb) 4042
4043
4044 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4041.906 kb on - strand, within RR42_RS18665 at 4041.997 kb on + strand, within RR42_RS18665 at 4041.997 kb on + strand, within RR42_RS18665 at 4042.085 kb on + strand, within RR42_RS18665 at 4042.107 kb on - strand, within RR42_RS18665 at 4042.191 kb on + strand, within RR42_RS18665 at 4042.191 kb on + strand, within RR42_RS18665 at 4042.192 kb on - strand, within RR42_RS18665 at 4042.192 kb on - strand, within RR42_RS18665 at 4042.193 kb on + strand, within RR42_RS18665 at 4042.193 kb on + strand, within RR42_RS18665 at 4042.193 kb on + strand, within RR42_RS18665 at 4042.193 kb on + strand, within RR42_RS18665 at 4042.194 kb on - strand, within RR42_RS18665 at 4042.244 kb on + strand at 4042.244 kb on + strand at 4042.245 kb on - strand at 4042.250 kb on - strand at 4042.352 kb on + strand at 4042.352 kb on + strand at 4042.353 kb on - strand at 4042.457 kb on + strand at 4042.476 kb on - strand at 4042.476 kb on - strand at 4042.476 kb on - strand at 4042.476 kb on - strand at 4042.476 kb on - strand at 4042.616 kb on + strand, within RR42_RS18670 at 4042.617 kb on - strand, within RR42_RS18670 at 4042.617 kb on - strand, within RR42_RS18670 at 4042.661 kb on + strand, within RR42_RS18670 at 4042.794 kb on + strand, within RR42_RS18670 at 4042.998 kb on + strand, within RR42_RS18670 at 4042.999 kb on - strand, within RR42_RS18670 at 4043.000 kb on + strand, within RR42_RS18670 at 4043.233 kb on - strand at 4043.327 kb on + strand at 4043.523 kb on - strand at 4043.788 kb on + strand, within RR42_RS18675 at 4043.788 kb on + strand, within RR42_RS18675 at 4043.874 kb on - strand, within RR42_RS18675 at 4043.916 kb on + strand, within RR42_RS18675 at 4043.937 kb on + strand, within RR42_RS18675 at 4043.937 kb on + strand, within RR42_RS18675 at 4043.937 kb on + strand, within RR42_RS18675 at 4043.938 kb on - strand, within RR42_RS18675 at 4043.938 kb on - strand, within RR42_RS18675 at 4043.938 kb on - strand, within RR42_RS18675 at 4043.944 kb on - strand, within RR42_RS18675
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 4,041,906 - RR42_RS18665 0.76 +0.7 4,041,997 + RR42_RS18665 0.80 +0.7 4,041,997 + RR42_RS18665 0.80 -1.1 4,042,085 + RR42_RS18665 0.84 +0.0 4,042,107 - RR42_RS18665 0.85 +0.4 4,042,191 + RR42_RS18665 0.88 +0.0 4,042,191 + RR42_RS18665 0.88 -0.9 4,042,192 - RR42_RS18665 0.88 +0.2 4,042,192 - RR42_RS18665 0.88 +0.1 4,042,193 + RR42_RS18665 0.88 +0.3 4,042,193 + RR42_RS18665 0.88 -0.1 4,042,193 + RR42_RS18665 0.88 -1.6 4,042,193 + RR42_RS18665 0.88 -0.3 4,042,194 - RR42_RS18665 0.89 +0.4 4,042,244 + -0.2 4,042,244 + +0.2 4,042,245 - +0.4 4,042,250 - -0.3 4,042,352 + -0.6 4,042,352 + -0.3 4,042,353 - -2.8 4,042,457 + +1.8 4,042,476 - +3.1 4,042,476 - -2.3 4,042,476 - +0.8 4,042,476 - +0.4 4,042,476 - -1.3 4,042,616 + RR42_RS18670 0.21 -1.5 4,042,617 - RR42_RS18670 0.21 -2.2 4,042,617 - RR42_RS18670 0.21 -0.8 4,042,661 + RR42_RS18670 0.27 -0.8 4,042,794 + RR42_RS18670 0.47 -1.8 4,042,998 + RR42_RS18670 0.76 -1.3 4,042,999 - RR42_RS18670 0.76 -1.3 4,043,000 + RR42_RS18670 0.77 -2.5 4,043,233 - +1.2 4,043,327 + -1.3 4,043,523 - -1.5 4,043,788 + RR42_RS18675 0.17 +0.6 4,043,788 + RR42_RS18675 0.17 +0.6 4,043,874 - RR42_RS18675 0.19 -0.4 4,043,916 + RR42_RS18675 0.21 -0.7 4,043,937 + RR42_RS18675 0.21 +0.4 4,043,937 + RR42_RS18675 0.21 +0.8 4,043,937 + RR42_RS18675 0.21 +0.5 4,043,938 - RR42_RS18675 0.21 -0.8 4,043,938 - RR42_RS18675 0.21 +1.9 4,043,938 - RR42_RS18675 0.21 +1.0 4,043,944 - RR42_RS18675 0.21 +0.5
Or see this region's nucleotide sequence