Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18270

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,958,269	+		RR42_RS18265	0.31	-0.5
3,958,269	+		RR42_RS18265	0.31	-0.8
3,958,270	-		RR42_RS18265	0.31	+0.3
3,958,270	-		RR42_RS18265	0.31	+2.2
3,958,276	+		RR42_RS18265	0.32	-0.4
3,958,282	+		RR42_RS18265	0.32	-0.6
3,958,293	+		RR42_RS18265	0.33	+0.3
3,958,294	-		RR42_RS18265	0.33	+0.1
3,958,294	-		RR42_RS18265	0.33	+0.1
3,958,315	+		RR42_RS18265	0.35	+0.3
3,958,316	-		RR42_RS18265	0.35	-0.3
3,958,316	-		RR42_RS18265	0.35	-0.8
3,958,316	-		RR42_RS18265	0.35	+0.5
3,958,429	+		RR42_RS18265	0.43	-0.0
3,958,429	+		RR42_RS18265	0.43	-0.8
3,958,429	+		RR42_RS18265	0.43	-0.8
3,958,429	+		RR42_RS18265	0.43	-0.8
3,958,429	+		RR42_RS18265	0.43	+0.3
3,958,429	+		RR42_RS18265	0.43	+0.0
3,958,429	+		RR42_RS18265	0.43	+0.6
3,958,429	+		RR42_RS18265	0.43	+0.0
3,958,429	+		RR42_RS18265	0.43	+0.2
3,958,429	+		RR42_RS18265	0.43	+0.5
3,958,429	+		RR42_RS18265	0.43	-0.0
3,958,430	-		RR42_RS18265	0.43	+0.3
3,958,430	-		RR42_RS18265	0.43	-0.1
3,958,430	-		RR42_RS18265	0.43	-0.7
3,958,430	-		RR42_RS18265	0.43	+0.8
3,958,430	-		RR42_RS18265	0.43	-1.8
3,958,430	-		RR42_RS18265	0.43	-0.7
3,958,430	-		RR42_RS18265	0.43	+0.6
3,958,430	-		RR42_RS18265	0.43	-0.7
3,958,430	-		RR42_RS18265	0.43	+0.2
3,958,576	-		RR42_RS18265	0.55	-0.8
3,958,579	+		RR42_RS18265	0.55	+0.9
3,958,667	-		RR42_RS18265	0.62	+0.3
3,958,734	+		RR42_RS18265	0.67	-0.5
3,958,942	+		RR42_RS18265	0.83	-0.6
3,958,942	+		RR42_RS18265	0.83	-1.1
3,958,943	-		RR42_RS18265	0.83	-1.2
3,959,053	+				-0.1
3,959,053	+				-0.1
3,959,054	-				+0.3
3,959,103	+				+0.2
3,959,511	+		RR42_RS18270	0.24	-2.2
3,959,511	+		RR42_RS18270	0.24	-2.8
3,959,511	+		RR42_RS18270	0.24	-2.1
3,959,515	-		RR42_RS18270	0.24	-3.8
3,959,876	+		RR42_RS18270	0.55	-4.1
3,959,877	-		RR42_RS18270	0.55	-0.8
3,959,933	+		RR42_RS18270	0.60	-2.5
3,960,008	+		RR42_RS18270	0.66	-2.9
3,960,392	+				-2.2
3,960,392	+				-2.2
3,960,423	+				-2.2
3,960,424	-				-0.5
3,960,453	+				-0.6
3,960,453	+				-2.0
3,960,453	+				-1.8
3,960,454	-				+0.2
3,960,454	-				+0.1
3,960,454	-				+0.8
3,960,454	-				+1.0
3,960,478	+				-1.9
3,960,479	-				-0.6
3,960,713	+				-2.5
3,960,713	+				-0.5
3,960,713	+				-0.3
3,960,714	-				-0.5
3,960,714	-				-0.3
3,960,714	-				-1.3
3,960,732	+				-0.9
3,960,732	+				-1.2
3,960,733	-				+0.7
3,960,733	-				+0.5
3,960,823	+		RR42_RS18280	0.22	+0.7
3,960,823	+		RR42_RS18280	0.22	-1.3
3,960,824	-		RR42_RS18280	0.22	-1.9
3,960,875	-		RR42_RS18280	0.36	+0.2
3,961,008	-		RR42_RS18280	0.71	+0.2
3,961,027	+		RR42_RS18280	0.76	-0.1
3,961,028	-		RR42_RS18280	0.77	+1.1
3,961,075	+		RR42_RS18280	0.89	-0.2
3,961,076	-		RR42_RS18280	0.89	-0.6
3,961,076	-		RR42_RS18280	0.89	-0.2
3,961,082	+				-0.9
3,961,082	+				-0.1
3,961,082	+				-0.9
3,961,082	+				+2.2
3,961,086	+				+0.7
3,961,086	+				-0.7
3,961,086	+				+0.4
3,961,086	+				-0.9
3,961,086	+				-1.0
3,961,086	+				+0.4
3,961,087	-				+0.2
3,961,087	-				+0.6
3,961,105	+				+0.4
3,961,105	+				+0.7
3,961,126	+				-0.1
3,961,126	+				+0.0
3,961,126	+				+1.2
3,961,126	+				+0.3
3,961,126	+				-1.3
3,961,126	+				-2.8
3,961,126	+				+0.8
3,961,126	+				-0.6
3,961,126	+				+0.6
3,961,126	+				-0.3
3,961,126	+				-0.8
3,961,127	-				+0.7
3,961,127	-				-0.8
3,961,127	-				-0.8
3,961,127	-				-1.3
3,961,127	-				+0.2
3,961,127	-				+0.4
3,961,182	+				+0.3
3,961,182	+				+0.2
3,961,183	-				-0.4
3,961,183	-				+1.2
3,961,183	-				+0.1
3,961,183	-				+1.0
3,961,183	-				+0.5
3,961,235	+				-1.6